Files in vDiveR
Visualization of Viral Protein Sequence Diversity Dynamics
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/sample_data.R
R/plot_correlation.R
R/plot_time.R
R/metadata_extraction.R
R/plot_conservation_level.R
R/plot_entropy.R
R/concat_conserved_kmer.R
R/DiveR-package.R
R/json2csv.R
R/plot_dynamics_protein.R
R/plot_world_map.R
R/plot_dynamics_proteome.R
inst/extdata/NCBI_Protein.faa
inst/extdata/city_mapper.csv
inst/extdata/GISAID_EpiCoV.faa
tests/testthat.R
tests/testthat/test-concat-seq.R
tests/testthat/test-json2csv.R
data/metadata.rda
data/protein_2hosts.rda
data/JSON_sample.rda
data/proteins_1host.rda
man/plot_time.Rd
man/plot_dynamics_protein.Rd
man/extract_from_NCBI.Rd
man/proteins_1host.Rd
man/plot_world_map.Rd
man/plot_conservation_level.Rd
man/extract_from_GISAID.Rd
man/plot_dynamics_proteome.Rd
man/plot_entropy.Rd
man/metadata.Rd
man/plot_correlation.Rd
man/json2csv.Rd
man/concat_conserved_kmer.Rd
man/vDiveR-package.Rd
man/metadata_extraction.Rd
man/protein_2hosts.Rd
man/JSON_sample.Rd
man/figures/vdiver_overview_chart.png
