Files in A1exanderAlexeyuk/LungCancerCharacterization
Metastatic Non-Small Cellular Lung Cancer Characterization Package
.gitignore
DESCRIPTION
NAMESPACE
NSCLCCharacterization.Rproj
NSCLCCharacterization.docx
R/CohortConstruction.R
R/CohortDiagnostics.R
R/CreateRegimenStatisticsTable.R
R/GenerateKaplanMeierDescription.R
R/GetDistributions.R
R/GetLaboratoryValues.R
R/Logging.R
R/RunStudy.R
R/Sharing.R
R/Utilits.R
extras/CodeToRun.R
extras/SankeyPlot.R
inst/cohorts/101.json
inst/cohorts/102.json
inst/cohorts/103.json
inst/cohorts/104.json
inst/cohorts/105.json
inst/cohorts/106.json
inst/cohorts/201.json
inst/cohorts/202.json
inst/settings/CohortGroups.csv
inst/settings/CohortGroupsDiagnostics.csv
inst/settings/CohortsToCreate.csv
inst/settings/CohortsToCreateOutcome.csv
inst/settings/CohortsToCreateTarget.csv
inst/settings/diagnostics/CohortsToCreateOutcome.csv
inst/settings/diagnostics/CohortsToCreateTarget.csv
inst/settings/featureTimeWindows.csv
inst/sql/sql_server/101.sql
inst/sql/sql_server/102.sql
inst/sql/sql_server/103.sql
inst/sql/sql_server/104.sql
inst/sql/sql_server/105.sql
inst/sql/sql_server/106.sql
inst/sql/sql_server/201.sql
inst/sql/sql_server/202.sql
inst/sql/sql_server/CopyAndCensorCohorts.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/CreateInclusionStatsTables.sql
inst/sql/sql_server/PullAllLabValues.sql
inst/sql/sql_server/TimeToEvent.sql
inst/sql/sql_server/TreatmentAnalysis/CreateRegimenStatsTable.sql
inst/sql/sql_server/TreatmentAnalysis/RegimenCategories.sql
inst/sql/sql_server/TreatmentAnalysis/TimeToNextTreatment.sql
inst/sql/sql_server/TreatmentAnalysis/TimeToNextTreatmentDistribution.sql
inst/sql/sql_server/TreatmentAnalysis/TimeToTreatmentDiscontinuation.sql
inst/sql/sql_server/TreatmentAnalysis/TimeToTreatmentDiscontinuationDistribution.sql
inst/sql/sql_server/TreatmentAnalysis/TimeToTreatmentInitiation.sql
inst/sql/sql_server/TreatmentAnalysis/TreatmentFreeInterval.sql
inst/sql/sql_server/TreatmentAnalysis/TreatmentFreeIntervalDistribution.sql
inst/sql/sql_server/distributions/AgeAtIndex.sql
inst/sql/sql_server/distributions/AlbuminAtIndex.sql
inst/sql/sql_server/distributions/CharlsonAtIndex.sql
inst/sql/sql_server/distributions/CreatininAtIndex.sql
inst/sql/sql_server/distributions/DistributiveStatistics.sql
inst/sql/sql_server/distributions/HemoglobinAtIndex.sql
inst/sql/sql_server/distributions/IQRComplementaryTables.sql
inst/sql/sql_server/distributions/LactateDehydrogenaseAtIndex.sql
inst/sql/sql_server/distributions/LeucocytesAtIndex.sql
inst/sql/sql_server/distributions/LymphocytesAtIndex.sql
inst/sql/sql_server/distributions/NeutrophilToLymphocyteRatioAtIndex.sql
inst/sql/sql_server/distributions/PDLAtIndex.sql
inst/sql/sql_server/distributions/PlateletAtIndex.sql
inst/sql/sql_server/distributions/PlateletToLymphocyteRatioAtIndex.sql
inst/sql/sql_server/distributions/RemoveComplementaryTables.sql
man/createCohortTable.Rd
man/createRegimenStats.Rd
man/instantiateCohortSet.Rd
man/runCohortDiagnostics.Rd
man/uploadResults.Rd
readme.md
tests/testthat.R
tests/testthat/test - CohortConstruction.R
tests/testthat/test - CohortDiagnostics.R
tests/testthat/test - CreateRegimenStatisticsTable.R
tests/testthat/test - Full.R
tests/testthat/test - GenerateKaplanMeierDescription.R
tests/testthat/test - GetDistributions.R
tests/testthat/test - RunStudy.R
