Files in ABMI/ASSURE
The ASSURE study
.Rbuildignore
.Rprofile
.gitignore
Assure.Rproj
DESCRIPTION
HydraConfig.json
NAMESPACE
R/CohortMethod.R
R/CreateAllCohorts.R
R/CreateCohorts.R
R/Export.R
R/Main.R
R/Package.R
R/ShinyApps.R
R/SubgroupAnalyses.R
R/SubmitResults.R
R/SynthesizePositiveControls.R
README.md
documents/ASSURE_protocol_v1.0.pdf
extras/CodeToRun.R
extras/PackageMaintenance.R
extras/README.md
inst/cohorts/CKim_Abdominal_pain.json
inst/cohorts/CKim_AntiADHD_alone_in_adhd_AGE_Group_2.json
inst/cohorts/CKim_Arrhythmia.json
inst/cohorts/CKim_Epilepsy.json
inst/cohorts/CKim_Essential_hypertension.json
inst/cohorts/CKim_Heart_Failure.json
inst/cohorts/CKim_MI.json
inst/cohorts/CKim_MPH_alone_in_adhd_Age_Group_2.json
inst/cohorts/CKim_MPH_alone_no_antidepressant_in_adhd_Age_Group_2.json
inst/cohorts/CKim_Parkinson.json
inst/cohorts/CKim_SSRI_MPH_in_adhd_Age_Group_2.json
inst/cohorts/CKim_SSRI_MPH_in_adhd_Age_Group_2_gap_0.json
inst/cohorts/CKim_SSRI_antiADHD_in_adhd_AGE_Group_2.json
inst/cohorts/CKim_SSRI_antiADHD_in_adhd_AGE_Group_2_gap_0.json
inst/cohorts/CKim_abnormal_gait.json
inst/cohorts/CKim_accident.json
inst/cohorts/CKim_acute_respiratory_failure.json
inst/cohorts/CKim_agitation.json
inst/cohorts/CKim_anemia.json
inst/cohorts/CKim_anorexia.json
inst/cohorts/CKim_antiADHD_alone_no_antidepressant_in_adhd_Age_Group_2.json
inst/cohorts/CKim_anxiety.json
inst/cohorts/CKim_appetitie.json
inst/cohorts/CKim_asthma_outcome.json
inst/cohorts/CKim_atrial_fibrillation.json
inst/cohorts/CKim_bleeding.json
inst/cohorts/CKim_cardiomyopathy.json
inst/cohorts/CKim_cerebrovascular_disease.json
inst/cohorts/CKim_chronic_kidney_disease.json
inst/cohorts/CKim_constipation.json
inst/cohorts/CKim_coronary_heart_disease.json
inst/cohorts/CKim_delirium.json
inst/cohorts/CKim_diarrhea.json
inst/cohorts/CKim_dizziness.json
inst/cohorts/CKim_dystonia.json
inst/cohorts/CKim_escitalopram_MPH_in_adhd_Age_Group_2.json
inst/cohorts/CKim_escitalopram_MPH_in_adhd_Age_Group_2_gap_0.json
inst/cohorts/CKim_escitalopram_antiADHD_in_adhd_Age_Group_2.json
inst/cohorts/CKim_escitalopram_antiADHD_in_adhd_Age_Group_2_gap_0.json
inst/cohorts/CKim_fatigue.json
inst/cohorts/CKim_fever.json
inst/cohorts/CKim_fluoxetine_MPH_in_adhd_Age_Group_2.json
inst/cohorts/CKim_fluoxetine_MPH_in_adhd_Age_Group_2_gap_0.json
inst/cohorts/CKim_fluoxetine_antiADHD_in_adhd_Age_Group_2.json
inst/cohorts/CKim_fluoxetine_antiADHD_in_adhd_Age_Group_2_gap_0.json
inst/cohorts/CKim_fracture.json
inst/cohorts/CKim_gambling.json
inst/cohorts/CKim_gynecomastia.json
inst/cohorts/CKim_headache.json
inst/cohorts/CKim_hyperlipidemia.json
inst/cohorts/CKim_hyperprolactinemia.json
inst/cohorts/CKim_hypo_hyperthyroidism.json
inst/cohorts/CKim_hyponatremia.json
inst/cohorts/CKim_hypotension.json
inst/cohorts/CKim_insomnia.json
inst/cohorts/CKim_intellectual_disability.json
inst/cohorts/CKim_ischemic_heart_disease.json
inst/cohorts/CKim_liver_disease.json
inst/cohorts/CKim_mania.json
inst/cohorts/CKim_myocarditis.json
inst/cohorts/CKim_nasopharyngitis.json
inst/cohorts/CKim_nausea_vomitting.json
inst/cohorts/CKim_obesity.json
inst/cohorts/CKim_osteoporosis_outcome.json
inst/cohorts/CKim_psychosis.json
inst/cohorts/CKim_schizophrenia.json
inst/cohorts/CKim_seizure.json
inst/cohorts/CKim_self_injury.json
inst/cohorts/CKim_sleep_disorder.json
inst/cohorts/CKim_substance_abuse.json
inst/cohorts/CKim_suicidal_event.json
inst/cohorts/CKim_thrombocytopenia.json
inst/cohorts/CKim_tic_disorder.json
inst/cohorts/CKim_traumatic_injury.json
inst/cohorts/CKim_tremor.json
inst/cohorts/CKim_type_1_diabetes.json
inst/cohorts/CKim_type_2_diabetes.json
inst/cohorts/CKim_upper_respiratory_tract_infection_pneumonia.json
inst/settings/CohortsToCreate.csv
inst/settings/NegativeControls.csv
inst/settings/StudySpecification.json
inst/settings/TcosOfInterest.csv
inst/settings/cmAnalysisList.json
inst/shiny/EvidenceExplorer/DataPulls.R
inst/shiny/EvidenceExplorer/EvidenceExplorer.Rproj
inst/shiny/EvidenceExplorer/PlotsAndTables.R
inst/shiny/EvidenceExplorer/Table1Specs.csv
inst/shiny/EvidenceExplorer/global.R
inst/shiny/EvidenceExplorer/server.R
inst/shiny/EvidenceExplorer/ui.R
inst/sql/sql_server/CKim_Abdominal_pain.sql
inst/sql/sql_server/CKim_AntiADHD_alone_in_adhd_AGE_Group_2.sql
inst/sql/sql_server/CKim_Arrhythmia.sql
inst/sql/sql_server/CKim_Epilepsy.sql
inst/sql/sql_server/CKim_Essential_hypertension.sql
inst/sql/sql_server/CKim_Heart_Failure.sql
inst/sql/sql_server/CKim_MI.sql
inst/sql/sql_server/CKim_MPH_alone_in_adhd_Age_Group_2.sql
inst/sql/sql_server/CKim_MPH_alone_no_antidepressant_in_adhd_Age_Group_2.sql
inst/sql/sql_server/CKim_Parkinson.sql
inst/sql/sql_server/CKim_SSRI_MPH_in_adhd_Age_Group_2.sql
inst/sql/sql_server/CKim_SSRI_MPH_in_adhd_Age_Group_2_gap_0.sql
inst/sql/sql_server/CKim_SSRI_antiADHD_in_adhd_AGE_Group_2.sql
inst/sql/sql_server/CKim_SSRI_antiADHD_in_adhd_AGE_Group_2_gap_0.sql
inst/sql/sql_server/CKim_abnormal_gait.sql
inst/sql/sql_server/CKim_accident.sql
inst/sql/sql_server/CKim_acute_respiratory_failure.sql
inst/sql/sql_server/CKim_agitation.sql
inst/sql/sql_server/CKim_anemia.sql
inst/sql/sql_server/CKim_anorexia.sql
inst/sql/sql_server/CKim_antiADHD_alone_no_antidepressant_in_adhd_Age_Group_2.sql
inst/sql/sql_server/CKim_anxiety.sql
inst/sql/sql_server/CKim_appetitie.sql
inst/sql/sql_server/CKim_asthma_outcome.sql
inst/sql/sql_server/CKim_atrial_fibrillation.sql
inst/sql/sql_server/CKim_bleeding.sql
inst/sql/sql_server/CKim_cardiomyopathy.sql
inst/sql/sql_server/CKim_cerebrovascular_disease.sql
inst/sql/sql_server/CKim_chronic_kidney_disease.sql
inst/sql/sql_server/CKim_constipation.sql
inst/sql/sql_server/CKim_coronary_heart_disease.sql
inst/sql/sql_server/CKim_delirium.sql
inst/sql/sql_server/CKim_diarrhea.sql
inst/sql/sql_server/CKim_dizziness.sql
inst/sql/sql_server/CKim_dystonia.sql
inst/sql/sql_server/CKim_escitalopram_MPH_in_adhd_Age_Group_2.sql
inst/sql/sql_server/CKim_escitalopram_MPH_in_adhd_Age_Group_2_gap_0.sql
inst/sql/sql_server/CKim_escitalopram_antiADHD_in_adhd_Age_Group_2.sql
inst/sql/sql_server/CKim_escitalopram_antiADHD_in_adhd_Age_Group_2_gap_0.sql
inst/sql/sql_server/CKim_fatigue.sql
inst/sql/sql_server/CKim_fever.sql
inst/sql/sql_server/CKim_fluoxetine_MPH_in_adhd_Age_Group_2.sql
inst/sql/sql_server/CKim_fluoxetine_MPH_in_adhd_Age_Group_2_gap_0.sql
inst/sql/sql_server/CKim_fluoxetine_antiADHD_in_adhd_Age_Group_2.sql
inst/sql/sql_server/CKim_fluoxetine_antiADHD_in_adhd_Age_Group_2_gap_0.sql
inst/sql/sql_server/CKim_fracture.sql
inst/sql/sql_server/CKim_gambling.sql
inst/sql/sql_server/CKim_gynecomastia.sql
inst/sql/sql_server/CKim_headache.sql
inst/sql/sql_server/CKim_hyperlipidemia.sql
inst/sql/sql_server/CKim_hyperprolactinemia.sql
inst/sql/sql_server/CKim_hypo_hyperthyroidism.sql
inst/sql/sql_server/CKim_hyponatremia.sql
inst/sql/sql_server/CKim_hypotension.sql
inst/sql/sql_server/CKim_insomnia.sql
inst/sql/sql_server/CKim_intellectual_disability.sql
inst/sql/sql_server/CKim_ischemic_heart_disease.sql
inst/sql/sql_server/CKim_liver_disease.sql
inst/sql/sql_server/CKim_mania.sql
inst/sql/sql_server/CKim_myocarditis.sql
inst/sql/sql_server/CKim_nasopharyngitis.sql
inst/sql/sql_server/CKim_nausea_vomitting.sql
inst/sql/sql_server/CKim_obesity.sql
inst/sql/sql_server/CKim_osteoporosis_outcome.sql
inst/sql/sql_server/CKim_psychosis.sql
inst/sql/sql_server/CKim_schizophrenia.sql
inst/sql/sql_server/CKim_seizure.sql
inst/sql/sql_server/CKim_self_injury.sql
inst/sql/sql_server/CKim_sleep_disorder.sql
inst/sql/sql_server/CKim_substance_abuse.sql
inst/sql/sql_server/CKim_suicidal_event.sql
inst/sql/sql_server/CKim_thrombocytopenia.sql
inst/sql/sql_server/CKim_tic_disorder.sql
inst/sql/sql_server/CKim_traumatic_injury.sql
inst/sql/sql_server/CKim_tremor.sql
inst/sql/sql_server/CKim_type_1_diabetes.sql
inst/sql/sql_server/CKim_type_2_diabetes.sql
inst/sql/sql_server/CKim_upper_respiratory_tract_infection_pneumonia.sql
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/GetCounts.sql
inst/sql/sql_server/NegativeControlOutcomes.sql
man/Assure-package.Rd
man/SubgroupAnalyses.Rd
man/createCohorts.Rd
man/execute.Rd
man/exportResults.Rd
man/launchEvidenceExplorer.Rd
man/prepareForEvidenceExplorer.Rd
man/runCohortMethod.Rd
man/synthesizePositiveControls.Rd
man/uploadResults.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
