Man pages for ABMI/Argos
What the Package Does (One Line, Title Case)
| ageAdjAPC | calculate Annual percent change of age adjusted incidence... |
| ageadjust | sum age adjusted incidence proportion and calculate 95... |
| agespe | aggregate incidence proportion according to gender and age... |
| Argos-package | What the Package Does (One Line, Title Case) |
| burden | Burden calculation function |
| bybirth | aggregate incidence proportion according to gender and birth... |
| calculateDALY | Calculate Years of Life Lost (YLL), Years Lost due to... |
| calculateIncidence | calculate incidence data |
| calculateNumberPerCovTime | function to calculate number per covariate per time unit |
| calculateOutcome | Calculating outcome function |
| calculateSurvival | Calculating survival rate function |
| createStandSettings | Creating setting for age/gender/race/ethnicity... |
| extractVisitCost | get cost data |
| getIncidenceData | get incidence data |
| getMortalityData | get mortality rate |
| getOutcomeData | get outcome data |
| getsurvData | get outcome, survivaltime, needed variables |
| limitCovariatesToPopulation | function to limit covariates of plpData to population |
| loadDisabilityWeight | Load default disability weight data |
| loadLifeExpectancy | Load default life expectancy data |
| loadMidYearPopulation | Load default mid-year population data |
| loadSurvivalExpectancy | Load default mid-year population data |
| PlotByBirthInc | incidence proportion plot by birth Year |
| PlotByBirthMort | plot mortality proportion |
| PlotByDiagnosisIncAgeAd | Age adjusted incidence proportion plot by diagnosis year |
| PlotByDiagnosisIncAgeS | Age specified incidence proportion plot by diagnosis year |
| PlotByDiagnosisMort | plot mortality proportion |
| plotforCostPerMt | monthly cost from 2months before diagnosis to 12months after... |
| plotforCostPerYrBarPat | the cost of the diagnosed year paid by patient |
| plotforCostPerYrBarPay | the cost of the diagnosed year paid by payer |
| plotforCostPerYrdiv | the total cost of the diagnosed year |
| plotforDALY | DALY value plot according to diagnosis year |
| plotforDALYratio | YLL:YLD ratio according to diagnosis year |
| plotSurvival1Yr | 1year survival rate plot by diagnosis year |
| plotSurvival3Yr | 3year survival rate plot by diagnosis year |
| plotSurvival5Yr | 5year survival rate plot by diagnosis year |
| plotSurvivalTotal | total patients's survival rate plot by diagnosis year |
| readySurvData | get outcome data |
| savecost | saving tables and plot image which are the results cost... |
| saveDALY | saving plot images which are the results DALY calculate |
| saveIncidence | saving tables and plot image which are the results incidence... |
| saveSurvival | saving tables and plot image which are the results incidence... |
| survivalCal | calculate survival rate using survival package |
