Files in ABMI/SevereCovidPrediction
A Package Skeleton for Patient Level Prediction Studies
.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
HydraConfig.json
NAMESPACE
R/CreateAllCohorts.R
R/CreateCohorts.R
R/Main.R
R/PackageResults.R
R/SevereCovidPrediction.R
R/SubmitResults.R
R/createDocument.R
R/createPlpProtocol.R
R/createValidationPackage.R
R/populateShinyApp.R
R/readJson.R
SevereCovidPrediction.Rproj
extras/CodeToRun.R
extras/CreatePredictionAnalysisDetails.R
extras/PackageMaintenance.R
inst/cohorts/JHChoany_death.json
inst/cohorts/SCYComposite_endpointECMO_intubation_invasive_ventilation_and_death.json
inst/cohorts/SCYouInfluenza.json
inst/settings/CohortsToCreate.csv
inst/settings/predictionAnalysisList.json
inst/shiny/PLPViewer/PLPViewer.Rproj
inst/shiny/PLPViewer/global.R
inst/shiny/PLPViewer/plots.R
inst/shiny/PLPViewer/server.R
inst/shiny/PLPViewer/ui.R
inst/shiny/PLPViewer/utils.R
inst/shiny/PLPViewer/www/about.png
inst/shiny/PLPViewer/www/custom.css
inst/shiny/PLPViewer/www/favicon.ico
inst/shiny/PLPViewer/www/logo.png
inst/sql/sql_server/CreateCohortTable.sql
inst/sql/sql_server/GetCounts.sql
inst/sql/sql_server/JHChoany_death.sql
inst/sql/sql_server/SCYComposite_endpointECMO_intubation_invasive_ventilation_and_death.sql
inst/sql/sql_server/SCYouInfluenza.sql
man/SevereCovidPrediction.Rd
man/createCohorts.Rd
man/createJournalDocument.Rd
man/createMultiPlpReport.Rd
man/createPlpProtocol.Rd
man/execute.Rd
man/packageResults.Rd
man/submitResults.Rd
man/viewShiny.Rd
readme.md
vignettes/Figure1.png
vignettes/UsingSkeletonPackage.Rmd
