API for AHallLab/triad.expression
Analysis of gene expresson for wheat genome triads.
| Global functions | |
|---|---|
| compute_runs | Man page Source code |
| count_triad_expressions_for_all_blocks | Source code |
| count_triad_expressions_for_block | Source code |
| expression_data | Man page |
| filterExpressionForFactors | Man page Source code |
| gene_expression_means_by_factors | Man page Source code |
| gene_expression_means_for_factor_levels | Man page Source code |
| gene_locations | Man page |
| getSamplesForFactors | Source code |
| join_distances_and_annotation | Source code |
| load_gene_locations | Source code |
| load_haplotype_locations | Source code |
| loom_plot | Source code |
| make_expression_boxplot | Source code |
| make_expression_figure | Source code |
| make_expression_ternplot | Source code |
| merge_runs | Source code |
| mk_expression_matrix | Man page Source code |
| normalize_triad_expression_means | Man page Source code |
| overlapping_genes_and_regions | Source code |
| place_genes_in_blocks_for_assembly | Source code |
| place_genes_into_haplotypes | Source code |
| prepExpressionData | Source code |
| prepHomology | Source code |
| pv_xy_plot | Source code |
| read_homology | Source code |
| reshape_homology_triads | Source code |
| triad_balance | Man page Source code |
| triad_expression_means_by_factors | Man page Source code |
| validateHomologyTable | Source code Source code |
| wicker_te_regions | Man page |
