Man pages for AlessioVeneziano/indianaBones
Analysis of bone 3D morphology
| as01 | Convert pixel values to 0 and 1 |
| cleanStack | Clean Image Stack |
| exampleSkeleton | example 3D topological skeleton |
| exampleStack | example 3D image stack |
| getAxis | Axes of point cloud |
| invertStack | Invert image stack |
| is01 | Check 01 pixels in image stack |
| isBinarized | Check binarized image stack |
| makeCube | Cubic Volume |
| makeSphere | Spheric Volume |
| readAmiraSkeleton | Read topological skeleton |
| readTiffStack | Read TIFF image stack |
| scaleStack | Scale image stack |
| skelConnectivity | Skeleton connectivity |
| skelDensity | Skeleton density |
| skelDirection | Skeleton angle and direction |
| skelLength | Skeleton Length |
| skelThickness | Skeleton thickness |
| skelTortuosity | Skeleton tortuosity |
| splitBone | Bone segmentation |
| Stack2coords | Binarised stack to coordinates |
| vectorAngle | Calculate angle between two vectors |
| VOI | Extract VOI from 3D image Stack |
| writeTiffStack | Write TIFF image stack |
