Files in AlexanderKononov/cytofBrowser

Detail analysis and visualisation CyTOF data

Library_louncher.R R/CCA_markers.R R/Clusterisation.R R/Correlation.R R/Cross_panel_analysis.R R/Data_preparation.R R/GDB.R R/Gating.R R/Gene_expression.R R/server.R R/ui.R README.Rmd README.md man/abundence_meter.Rd man/add_cluster_GDB.Rd man/add_marker_GDB.Rd man/add_observation_GDB.Rd man/add_phenounite_GDB.Rd man/add_populatio_GDB.Rd man/add_sample_GDB.Rd man/add_signals_between_clusters_GDB.Rd man/add_signals_in_cluster_GDB.Rd man/asinh_transformation.Rd man/backgraund_correlation.Rd man/background_anova.Rd man/cell_filter.Rd man/cell_type_organiser.Rd man/cluster_merging.Rd man/cluster_unification.Rd man/comparator_mk.Rd man/ct_sample_aggregator.Rd man/cytofBrowserGUI.Rd man/cytofBrowser_server.Rd man/filter_edges.Rd man/filter_mk.Rd man/get_UMAP_dataframe.Rd man/get_abund_cross_panel.Rd man/get_abundance.Rd man/get_abundance_correlation.Rd man/get_abundance_dataframe.Rd man/get_add_cell_annotation_from_data.Rd man/get_adj_corr_pValue_matrix.Rd man/get_anova_mk.Rd man/get_bg_anova_land_mk.Rd man/get_bg_corr_land_mk.Rd man/get_bg_naive_corr_land_mk.Rd man/get_cell_annotation_fcs_files.Rd man/get_cell_clustering_vector.Rd man/get_cell_number.Rd man/get_cell_type_from_gates.Rd man/get_cluster_annotation.Rd man/get_clustered_fcs_files.Rd man/get_clustering_exp_cell_f_cross_panel.Rd man/get_common_markers.Rd man/get_consensusClust.Rd man/get_contrast_corr_land_mk.Rd man/get_contrast_naive_corr_land_mk.Rd man/get_corr_coef_matrix.Rd man/get_corr_pValue_matrix.Rd man/get_data_for_gating.Rd man/get_deconvol_dataframe.Rd man/get_edges.Rd man/get_entire_panel.Rd man/get_euclid_dist.Rd man/get_fcs_cell_clustering_vector.Rd man/get_fcs_cluster_annotation.Rd man/get_fcs_metadata.Rd man/get_fcs_panel.Rd man/get_fcs_raw.Rd man/get_inds_subset.Rd man/get_list_cell_ctDist.Rd man/get_list_expData.Rd man/get_matrices_corr_info.Rd man/get_mk_clust_heatmap_dataframe.Rd man/get_neo_api.Rd man/get_nodes.Rd man/get_optimal_clusters.Rd man/get_panel_content.Rd man/get_signal_between_cluster_mk.Rd man/get_signal_in_cluster_mk.Rd man/get_signals_between_clusters.Rd man/get_signals_between_clusters_top.Rd man/get_signals_in_cluster.Rd man/get_signals_in_cluster_top.Rd man/get_som.Rd man/get_test_fcs_metadata.Rd man/get_threshold_exp_cell_f_cross_panel.Rd man/get_use_marker.Rd man/get_write_corr_info_cross_p.Rd man/htest_data_extractor.Rd man/htest_data_extractor_mk.Rd man/neo_api_ping.Rd man/outlier_by_quantile_transformation.Rd man/scatter_plot_data_prep.Rd man/signal_extractor.Rd man/signal_filter.Rd man/take_top_correlation.Rd man/target_type_cortest.Rd man/target_type_data_extractor.Rd man/target_type_organiser.Rd man/tt_sample_aggregator.Rd tests/testthat.R tests/testthat/test_main_pipeline.R