Man pages for AlexiaJM/LEGIT
Latent Environmental & Genetic InTeraction (LEGIT) Model
| backward_step | Internal function that does the backward step for the... |
| backward_step_IM | Internal function that does the backward step for the... |
| best_model | Best model |
| best_model.elastic_net_var_select | Best model from elastic net variable selection |
| bootstrap_var_select | Bootstrap variable selection (for IMLEGIT) |
| elastic_net_var_select | Elastic net for variable selection in IMLEGIT model |
| example_2way | Simulated example of a 2 way interaction GxE model. |
| example_3way | Simulated example of a 3 way interaction GxExz model |
| example_3way_3latent | Simulated example of a 3 way interaction GxExZ model |
| example_with_crossover | Simulated example of a 2 way interaction GxE model with... |
| forward_step | Internal function that does the forward step for the stepwise... |
| forward_step_IM | Internal function that does the forward step for the stepwise... |
| genetic_var_select | Parallel genetic algorithm variable selection (for IMLEGIT) |
| GxE_interaction_RoS | Regions of significance using Johnson-Neyman technique |
| GxE_interaction_test | Testing of the GxE interaction |
| IMLEGIT | Independent Multiple Latent Environmental & Genetic... |
| IMLEGIT_cv | Cross-validation for the IMLEGIT model |
| IMLEGIT_net | Independent Multiple Latent Environmental & Genetic... |
| IMLEGIT_to_LEGIT | IMLEGIT to LEGIT |
| LEGIT | Latent Environmental & Genetic InTeraction (LEGIT) model |
| LEGIT_cv | Cross-validation for the LEGIT model |
| LEGIT_to_IMLEGIT | LEGIT to IMLEGIT |
| longitudinal_folds | Longitudinal folds |
| nes_var_select | Parallel natural evolutionary variable selection assuming... |
| plot.elastic_net_var_select | Plot function for the output of elastic_net_var_select |
| plot.LEGIT | Plot |
| predict.IMLEGIT | Predictions of IMLEGIT fits |
| predict.LEGIT | Predictions of LEGIT fits |
| r1nes_var_select | Parallel natural evolutionary variable selection assuming... |
| rGE | Gene-Environment correlation estimation and testing |
| rGE.IMLEGIT | Gene-Environment correlation estimation and testing of... |
| rGE.LEGIT | Gene-Environment correlation estimation and testing of LEGIT... |
| stepwise_search | Stepwise search for the best subset of genetic variants or... |
| stepwise_search_IM | Stepwise search for the best subset of elements in the latent... |
| summary.elastic_net_var_select | Summary function for the output of elastic_net_var_select |
| summary.IMLEGIT | Summarizing IMLEGIT fits |
| summary.LEGIT | Summarizing LEGIT fits |
