API for BBCG/epialleleR
Fast, Epiallele-Aware Methylation Caller and Reporter
| Global functions | |
|---|---|
| callMethylation | Man page |
| extractPatterns | Man page |
| generateAmpliconReport | Man page |
| generateBedEcdf | Man page |
| generateBedReport | Man page |
| generateCaptureReport | Man page |
| generateCytosineReport | Man page |
| generateMhlReport | Man page |
| generateVcfReport | Man page |
| plotPatterns | Man page |
| preprocessBam | Man page |
| preprocessGenome | Man page |
| rcpp_call_methylation_genome | Source code |
| rcpp_check_bam | Source code |
| rcpp_cx_report | Source code |
| rcpp_extract_patterns | Source code |
| rcpp_fep | Source code |
| rcpp_get_base_freqs | Source code |
| rcpp_get_xm_beta | Source code |
| rcpp_match_amplicon | Source code |
| rcpp_match_capture | Source code |
| rcpp_mhl_report | Source code |
| rcpp_read_bam_mm_single | Source code |
| rcpp_read_bam_paired | Source code |
| rcpp_read_bam_single | Source code |
| rcpp_read_genome | Source code |
| rcpp_simulate_bam | Source code |
| rcpp_threshold_reads | Source code |
| simulateBam | Man page |
