Files in BRL-BCM/CTDext
Extension package for the CTD R package.
.gitignore
CTDext.Rproj
Clinical_CTD.Rmd
DESCRIPTION
LICENSE
NAMESPACE
R/data.HMDBtoKEGG.r
R/data.LabeltoKEGG.r
R/mle.blowoutPtSim.r
R/mle.kraftMcMillan.r
R/pathway.ListMaps_metabolon.r
R/pathway.ListMetabolites_metabolon.r
R/plot.hmSim.r
R/plot.knnSim.r
R/plot.mdsSim.r
R/plot.pathwayMap.r
R/plot.pathwayMap_CaseCntl.r
R/shiny.getMSEA_Metabolon.R
R/shiny.getORA_Metabolon.R
R/shiny.getPathwayIgraph.r
R/stat.getMSEA_Metabolon.r
R/stat.getORA_Metabolon.r
README.md
inst/extdata/Arginine-Metabolism/Arginine-Metabolism.gml
inst/extdata/Arginine-Metabolism/Name-Arginine-Metabolism.txt
inst/extdata/Arginine-Metabolism/Type-Arginine-Metabolism.txt
inst/extdata/Ascorbate-Metabolism/Ascorbate-Metabolism.gml
inst/extdata/Ascorbate-Metabolism/Name-Ascorbate-Metabolism.txt
inst/extdata/Ascorbate-Metabolism/Type-Ascorbate-Metabolism.txt
inst/extdata/Asp-Glu-Metabolism/Asp-Glu-Metabolism.gml
inst/extdata/Asp-Glu-Metabolism/Name-Asp-Glu-Metabolism.txt
inst/extdata/Asp-Glu-Metabolism/Type-Asp-Glu-Metabolism.txt
inst/extdata/BCAA-Metabolism/BCAA-Metabolism.gml
inst/extdata/BCAA-Metabolism/Name-BCAA-Metabolism.txt
inst/extdata/BCAA-Metabolism/Type-BCAA-Metabolism.txt
inst/extdata/Benzoate-Metabolism/Benzoate-Metabolism.gml
inst/extdata/Benzoate-Metabolism/Name-Benzoate-Metabolism.txt
inst/extdata/Benzoate-Metabolism/Type-Benzoate-Metabolism.txt
inst/extdata/Beta-Oxidation/Beta-Oxidation.gml
inst/extdata/Beta-Oxidation/Name-Beta-Oxidation.txt
inst/extdata/Beta-Oxidation/Type-Beta-Oxidation.txt
inst/extdata/Bile-Acid-Metabolism/Bile-Acid-Metabolism.gml
inst/extdata/Bile-Acid-Metabolism/Name-Bile-Acid-Metabolism.txt
inst/extdata/Bile-Acid-Metabolism/Type-Bile-Acid-Metabolism.txt
inst/extdata/Carbamoylphosphate-Pathway/Carbamoylphosphate-Pathway.gml
inst/extdata/Carbamoylphosphate-Pathway/Name-Carbamoylphosphate-Pathway.txt
inst/extdata/Carbamoylphosphate-Pathway/Type-Carbamoylphosphate-Pathway.txt
inst/extdata/Carnitine-Biosynthesis/Carnitine-Biosynthesis.gml
inst/extdata/Carnitine-Biosynthesis/Name-Carnitine-Biosynthesis.txt
inst/extdata/Carnitine-Biosynthesis/Type-Carnitine-Biosynthesis.txt
inst/extdata/Cholesterol-Synthesis/Cholesterol-Synthesis.gml
inst/extdata/Cholesterol-Synthesis/Name-Cholesterol-Synthesis.txt
inst/extdata/Cholesterol-Synthesis/Type-Cholesterol-Synthesis.txt
inst/extdata/Creatine-Metabolism/Creatine-Metabolism.gml
inst/extdata/Creatine-Metabolism/Name-Creatine-Metabolism.txt
inst/extdata/Creatine-Metabolism/Type-Creatine-Metabolism.txt
inst/extdata/Dicarboxylic-Acid-Metabolism/Dicarboxylic-Acid-Metabolism.gml
inst/extdata/Dicarboxylic-Acid-Metabolism/Name-Dicarboxylic-Acid-Metabolism.txt
inst/extdata/Dicarboxylic-Acid-Metabolism/Type-Dicarboxylic-Acid-Metabolism.txt
inst/extdata/Eicosanoids/Eicosanoids.gml
inst/extdata/Eicosanoids/Name-Eicosanoids.txt
inst/extdata/Eicosanoids/Type-Eicosanoids.txt
inst/extdata/Endocannabinoid-Synthesis/Endocannabinoid-Synthesis.gml
inst/extdata/Endocannabinoid-Synthesis/Name-Endocannabinoid-Synthesis.txt
inst/extdata/Endocannabinoid-Synthesis/Type-Endocannabinoid-Synthesis.txt
inst/extdata/Fatty-Acid-Metabolism/Fatty-Acid-Metabolism.gml
inst/extdata/Fatty-Acid-Metabolism/Name-Fatty-Acid-Metabolism.txt
inst/extdata/Fatty-Acid-Metabolism/Type-Fatty-Acid-Metabolism.txt
inst/extdata/Fibrinogen-Cleavage-Peptides/Fibrinogen-Cleavage-Peptides.gml
inst/extdata/Fibrinogen-Cleavage-Peptides/Name-Fibrinogen-Cleavage-Peptides.txt
inst/extdata/Fibrinogen-Cleavage-Peptides/Type-Fibrinogen-Cleavage-Peptides.txt
inst/extdata/GABA-Shunt/GABA-Shunt.gml
inst/extdata/GABA-Shunt/Name-GABA-Shunt.txt
inst/extdata/GABA-Shunt/Type-GABA-Shunt.txt
inst/extdata/Galactose-Metabolism/Galactose-Metabolism.gml
inst/extdata/Galactose-Metabolism/Name-Galactose-Metabolism.txt
inst/extdata/Galactose-Metabolism/Type-Galactose-Metabolism.txt
inst/extdata/Glutathione-Metabolism/Glutathione-Metabolism.gml
inst/extdata/Glutathione-Metabolism/Name-Glutathione-Metabolism.txt
inst/extdata/Glutathione-Metabolism/Type-Glutathione-Metabolism.txt
inst/extdata/Gly-Ser-Thr-Metabolism/Gly-Ser-Thr-Metabolism.gml
inst/extdata/Gly-Ser-Thr-Metabolism/Name-Gly-Ser-Thr-Metabolism.txt
inst/extdata/Gly-Ser-Thr-Metabolism/Type-Gly-Ser-Thr-Metabolism.txt
inst/extdata/Glycogen-Metabolism/Glycogen-Metabolism.gml
inst/extdata/Glycogen-Metabolism/Name-Glycogen-Metabolism.txt
inst/extdata/Glycogen-Metabolism/Type-Glycogen-Metabolism.txt
inst/extdata/Glycolysis/Glycolysis.gml
inst/extdata/Glycolysis/Name-Glycolysis.txt
inst/extdata/Glycolysis/Type-Glycolysis.txt
inst/extdata/Glycosylation/Glycosylation.gml
inst/extdata/Glycosylation/Name-Glycosylation.txt
inst/extdata/Glycosylation/Type-Glycosylation.txt
inst/extdata/Hemoglobin-Porphyrin-Metabolism/Hemoglobin-Porphyrin-Metabolism.gml
inst/extdata/Hemoglobin-Porphyrin-Metabolism/Name-Hemoglobin-Porphyrin-Metabolism.txt
inst/extdata/Hemoglobin-Porphyrin-Metabolism/Type-Hemoglobin-Porphyrin-Metabolism.txt
inst/extdata/Histidine-Metabolism/Histidine-Metabolism.gml
inst/extdata/Histidine-Metabolism/Name-Histidine-Metabolism.txt
inst/extdata/Histidine-Metabolism/Type-Histidine-Metabolism.txt
inst/extdata/Inositol-Metabolism/Inositol-Metabolism.gml
inst/extdata/Inositol-Metabolism/Name-Inositol-Metabolism.txt
inst/extdata/Inositol-Metabolism/Type-Inositol-Metabolism.txt
inst/extdata/Ketone-Bodies/Ketone-Bodies.gml
inst/extdata/Ketone-Bodies/Name-Ketone-Bodies.txt
inst/extdata/Ketone-Bodies/Type-Ketone-Bodies.txt
inst/extdata/Lysine-Catabolism/Lysine-Catabolism.gml
inst/extdata/Lysine-Catabolism/Name-Lysine-Catabolism.txt
inst/extdata/Lysine-Catabolism/Type-Lysine-Catabolism.txt
inst/extdata/Met-Cys-Metabolism/Met-Cys-Metabolism.gml
inst/extdata/Met-Cys-Metabolism/Name-Met-Cys-Metabolism.txt
inst/extdata/Met-Cys-Metabolism/Type-Met-Cys-Metabolism.txt
inst/extdata/Metabolon-Pathway-Template.r
inst/extdata/Mevalonate-Metabolism/Mevalonate-Metabolism.gml
inst/extdata/Mevalonate-Metabolism/Name-Mevalonate-Metabolism.txt
inst/extdata/Mevalonate-Metabolism/Type-Mevalonate-Metabolism.txt
inst/extdata/Nicotinate-Nicotinamide-Metabolism/Name-Nicotinate-Nicotinamide-Metabolism.txt
inst/extdata/Nicotinate-Nicotinamide-Metabolism/Nicotinate-Nicotinamide-Metabolism.gml
inst/extdata/Nicotinate-Nicotinamide-Metabolism/Type-Nicotinate-Nicotinamide-Metabolism.txt
inst/extdata/Pantothenate-Metabolism/Name-Pantothenate-Metabolism.txt
inst/extdata/Pantothenate-Metabolism/Pantothenate-Metabolism.gml
inst/extdata/Pantothenate-Metabolism/Type-Pantothenate-Metabolism.txt
inst/extdata/Pathway_GMTs/Metabolon.gmt
inst/extdata/Pentose-Phosphate-Metabolism/Name-Pentose-Phosphate-Metabolism.txt
inst/extdata/Pentose-Phosphate-Metabolism/Pentose-Phosphate-Metabolism.gml
inst/extdata/Pentose-Phosphate-Metabolism/Type-Pentose-Phosphate-Metabolism.txt
inst/extdata/Phe-Tyr-Metabolism/Name-Phe-Tyr-Metabolism.txt
inst/extdata/Phe-Tyr-Metabolism/Phe-Tyr-Metabolism.gml
inst/extdata/Phe-Tyr-Metabolism/Type-Phe-Tyr-Metabolism.txt
inst/extdata/Phospholipid-Metabolism/Name-Phospholipid-Metabolism.txt
inst/extdata/Phospholipid-Metabolism/Phospholipid-Metabolism.gml
inst/extdata/Phospholipid-Metabolism/Type-Phospholipid-Metabolism.txt
inst/extdata/Polyamine-Metabolism/Name-Polyamine-Metabolism.txt
inst/extdata/Polyamine-Metabolism/Polyamine-Metabolism.gml
inst/extdata/Polyamine-Metabolism/Type-Polyamine-Metabolism.txt
inst/extdata/Proline-Metabolism/Name-Proline-Metabolism.txt
inst/extdata/Proline-Metabolism/Proline-Metabolism.gml
inst/extdata/Proline-Metabolism/Type-Proline-Metabolism.txt
inst/extdata/Protein-Degradation/Name-Protein-Degradation.txt
inst/extdata/Protein-Degradation/Protein-Degradation.gml
inst/extdata/Protein-Degradation/Type-Protein-Degradation.txt
inst/extdata/Purine-Metabolism/Name-Purine-Metabolism.txt
inst/extdata/Purine-Metabolism/Purine-Metabolism.gml
inst/extdata/Purine-Metabolism/Type-Purine-Metabolism.txt
inst/extdata/Pyridoxal-Metabolism/Name-Pyridoxal-Metabolism.txt
inst/extdata/Pyridoxal-Metabolism/Pyridoxal-Metabolism.gml
inst/extdata/Pyridoxal-Metabolism/Type-Pyridoxal-Metabolism.txt
inst/extdata/Pyrimidine-Metabolism/Name-Pyrimidine-Metabolism.txt
inst/extdata/Pyrimidine-Metabolism/Pyrimidine-Metabolism.gml
inst/extdata/Pyrimidine-Metabolism/Type-Pyrimidine-Metabolism.txt
inst/extdata/RData/Arginine-Metabolism.RData
inst/extdata/RData/Ascorbate-Metabolism.RData
inst/extdata/RData/Asp-Glu-Metabolism.RData
inst/extdata/RData/BCAA-Metabolism.RData
inst/extdata/RData/Benzoate-Metabolism.RData
inst/extdata/RData/Beta-Oxidation.RData
inst/extdata/RData/Bile-Acid-Metabolism.RData
inst/extdata/RData/Carbamoylphosphate-Pathway.RData
inst/extdata/RData/Carnitine-Biosynthesis.RData
inst/extdata/RData/Cholesterol-Synthesis.RData
inst/extdata/RData/Creatine-Metabolism.RData
inst/extdata/RData/Dicarboxylic-Acid-Metabolism.RData
inst/extdata/RData/Eicosanoids.RData
inst/extdata/RData/Endocannabinoid-Synthesis.RData
inst/extdata/RData/Fatty-Acid-Metabolism.RData
inst/extdata/RData/Fibrinogen-Cleavage-Peptides.RData
inst/extdata/RData/GABA-Shunt.RData
inst/extdata/RData/Galactose-Metabolism.RData
inst/extdata/RData/Glutathione-Metabolism.RData
inst/extdata/RData/Gly-Ser-Thr-Metabolism.RData
inst/extdata/RData/Glycogen-Metabolism.RData
inst/extdata/RData/Glycolysis.RData
inst/extdata/RData/Glycosylation.RData
inst/extdata/RData/Hemoglobin-Porphyrin-Metabolism.RData
inst/extdata/RData/Histidine-Metabolism.RData
inst/extdata/RData/Inositol-Metabolism.RData
inst/extdata/RData/Ketone-Bodies.RData
inst/extdata/RData/Lysine-Catabolism.RData
inst/extdata/RData/Met-Cys-Metabolism.RData
inst/extdata/RData/Mevalonate-Metabolism.RData
inst/extdata/RData/Nicotinate-Nicotinamide-Metabolism.RData
inst/extdata/RData/Pantothenate-Metabolism.RData
inst/extdata/RData/Pentose-Phosphate-Metabolism.RData
inst/extdata/RData/Phe-Tyr-Metabolism.RData
inst/extdata/RData/Phospholipid-Metabolism.RData
inst/extdata/RData/Polyamine-Metabolism.RData
inst/extdata/RData/Proline-Metabolism.RData
inst/extdata/RData/Protein-Degradation.RData
inst/extdata/RData/Purine-Metabolism.RData
inst/extdata/RData/Pyridoxal-Metabolism.RData
inst/extdata/RData/Pyrimidine-Metabolism.RData
inst/extdata/RData/Riboflavin-Metabolism.RData
inst/extdata/RData/Secondary-Bile-Acids.RData
inst/extdata/RData/Sorbitol-Glycerol-Metabolism.RData
inst/extdata/RData/Sphingolipid-Metabolism.RData
inst/extdata/RData/Steroid-Hormone-Biosynthesis.RData
inst/extdata/RData/TCA-Cycle.RData
inst/extdata/RData/Thyroid-Hormone-Synthesis.RData
inst/extdata/RData/Tryptophan-Metabolism.RData
inst/extdata/RData/allPathways.RData
inst/extdata/Riboflavin-Metabolism/Name-Riboflavin-Metabolism.txt
inst/extdata/Riboflavin-Metabolism/Riboflavin-Metabolism.gml
inst/extdata/Riboflavin-Metabolism/Type-Riboflavin-Metabolism.txt
inst/extdata/Secondary-Bile-Acids/Name-Secondary-Bile-Acids.txt
inst/extdata/Secondary-Bile-Acids/Secondary-Bile-Acids.gml
inst/extdata/Secondary-Bile-Acids/Type-Secondary-Bile-Acids.txt
inst/extdata/Sorbitol-Glycerol-Metabolism/Name-Sorbitol-Glycerol-Metabolism.txt
inst/extdata/Sorbitol-Glycerol-Metabolism/Sorbitol-Glycerol-Metabolism.gml
inst/extdata/Sorbitol-Glycerol-Metabolism/Type-Sorbitol-Glycerol-Metabolism.txt
inst/extdata/Sphingolipid-Metabolism/Name-Sphingolipid-Metabolism.txt
inst/extdata/Sphingolipid-Metabolism/Sphingolipid-Metabolism.gml
inst/extdata/Sphingolipid-Metabolism/Type-Sphingolipid-Metabolism.txt
inst/extdata/Steroid-Hormone-Biosynthesis/Name-Steroid-Hormone-Biosynthesis.txt
inst/extdata/Steroid-Hormone-Biosynthesis/Steroid-Hormone-Biosynthesis.gml
inst/extdata/Steroid-Hormone-Biosynthesis/Type-Steroid-Hormone-Biosynthesis.txt
inst/extdata/TCA-Cycle/Name-TCA-Cycle.txt
inst/extdata/TCA-Cycle/TCA-Cycle.gml
inst/extdata/TCA-Cycle/Type-TCA-Cycle.txt
inst/extdata/Thyroid-Hormone-Synthesis/Name-Thyroid-Hormone-Synthesis.txt
inst/extdata/Thyroid-Hormone-Synthesis/Thyroid-Hormone-Synthesis.gml
inst/extdata/Thyroid-Hormone-Synthesis/Type-Thyroid-Hormone-Synthesis.txt
inst/extdata/Tryptophan-Metabolism/Name-Tryptophan-Metabolism.txt
inst/extdata/Tryptophan-Metabolism/Tryptophan-Metabolism.gml
inst/extdata/Tryptophan-Metabolism/Type-Tryptophan-Metabolism.txt
inst/extdata/allPathways/Name-allPathways.txt
inst/extdata/allPathways/Type-allPathways.txt
inst/extdata/allPathways/allPathways.gml
inst/extdata/complexNodes.RData
inst/extdata/metabolon_to_data.txt
inst/networks/ind_foldNets/bg_aadc_fold1.RData
inst/networks/ind_foldNets/bg_aadc_fold2.RData
inst/networks/ind_foldNets/bg_aadc_fold3.RData
inst/networks/ind_foldNets/bg_abat_fold1.RData
inst/networks/ind_foldNets/bg_abat_fold2.RData
inst/networks/ind_foldNets/bg_abat_fold3.RData
inst/networks/ind_foldNets/bg_abat_fold4.RData
inst/networks/ind_foldNets/bg_abat_fold5.RData
inst/networks/ind_foldNets/bg_abat_fold6.RData
inst/networks/ind_foldNets/bg_abat_fold7.RData
inst/networks/ind_foldNets/bg_adsl_fold1.RData
inst/networks/ind_foldNets/bg_adsl_fold2.RData
inst/networks/ind_foldNets/bg_adsl_fold3.RData
inst/networks/ind_foldNets/bg_arg_fold1.RData
inst/networks/ind_foldNets/bg_arg_fold10.RData
inst/networks/ind_foldNets/bg_arg_fold11.RData
inst/networks/ind_foldNets/bg_arg_fold12.RData
inst/networks/ind_foldNets/bg_arg_fold13.RData
inst/networks/ind_foldNets/bg_arg_fold2.RData
inst/networks/ind_foldNets/bg_arg_fold3.RData
inst/networks/ind_foldNets/bg_arg_fold4.RData
inst/networks/ind_foldNets/bg_arg_fold5.RData
inst/networks/ind_foldNets/bg_arg_fold6.RData
inst/networks/ind_foldNets/bg_arg_fold7.RData
inst/networks/ind_foldNets/bg_arg_fold8.RData
inst/networks/ind_foldNets/bg_arg_fold9.RData
inst/networks/ind_foldNets/bg_asld_fold1.RData
inst/networks/ind_foldNets/bg_asld_fold10.RData
inst/networks/ind_foldNets/bg_asld_fold11.RData
inst/networks/ind_foldNets/bg_asld_fold2.RData
inst/networks/ind_foldNets/bg_asld_fold3.RData
inst/networks/ind_foldNets/bg_asld_fold4.RData
inst/networks/ind_foldNets/bg_asld_fold5.RData
inst/networks/ind_foldNets/bg_asld_fold6.RData
inst/networks/ind_foldNets/bg_asld_fold7.RData
inst/networks/ind_foldNets/bg_asld_fold8.RData
inst/networks/ind_foldNets/bg_asld_fold9.RData
inst/networks/ind_foldNets/bg_cit_fold1.RData
inst/networks/ind_foldNets/bg_cit_fold2.RData
inst/networks/ind_foldNets/bg_cit_fold3.RData
inst/networks/ind_foldNets/bg_cit_fold4.RData
inst/networks/ind_foldNets/bg_cit_fold5.RData
inst/networks/ind_foldNets/bg_cit_fold6.RData
inst/networks/ind_foldNets/bg_cit_fold7.RData
inst/networks/ind_foldNets/bg_cit_fold8.RData
inst/networks/ind_foldNets/bg_cit_fold9.RData
inst/networks/ind_foldNets/bg_cob_fold1.RData
inst/networks/ind_foldNets/bg_cob_fold2.RData
inst/networks/ind_foldNets/bg_cob_fold3.RData
inst/networks/ind_foldNets/bg_cob_fold4.RData
inst/networks/ind_foldNets/bg_cob_fold5.RData
inst/networks/ind_foldNets/bg_cob_fold6.RData
inst/networks/ind_foldNets/bg_ga_fold1.RData
inst/networks/ind_foldNets/bg_ga_fold2.RData
inst/networks/ind_foldNets/bg_ga_fold3.RData
inst/networks/ind_foldNets/bg_ga_fold4.RData
inst/networks/ind_foldNets/bg_ga_fold5.RData
inst/networks/ind_foldNets/bg_gamt_fold1.RData
inst/networks/ind_foldNets/bg_gamt_fold2.RData
inst/networks/ind_foldNets/bg_gamt_fold3.RData
inst/networks/ind_foldNets/bg_gamt_fold4.RData
inst/networks/ind_foldNets/bg_gamt_fold5.RData
inst/networks/ind_foldNets/bg_gamt_fold6.RData
inst/networks/ind_foldNets/bg_gamt_fold7.RData
inst/networks/ind_foldNets/bg_gamt_fold8.RData
inst/networks/ind_foldNets/bg_mma_fold1.RData
inst/networks/ind_foldNets/bg_mma_fold2.RData
inst/networks/ind_foldNets/bg_mma_fold3.RData
inst/networks/ind_foldNets/bg_mma_fold4.RData
inst/networks/ind_foldNets/bg_mma_fold5.RData
inst/networks/ind_foldNets/bg_mma_fold6.RData
inst/networks/ind_foldNets/bg_mma_fold7.RData
inst/networks/ind_foldNets/bg_mma_fold8.RData
inst/networks/ind_foldNets/bg_mma_fold9.RData
inst/networks/ind_foldNets/bg_msud_fold1.RData
inst/networks/ind_foldNets/bg_msud_fold10.RData
inst/networks/ind_foldNets/bg_msud_fold11.RData
inst/networks/ind_foldNets/bg_msud_fold12.RData
inst/networks/ind_foldNets/bg_msud_fold13.RData
inst/networks/ind_foldNets/bg_msud_fold14.RData
inst/networks/ind_foldNets/bg_msud_fold15.RData
inst/networks/ind_foldNets/bg_msud_fold16.RData
inst/networks/ind_foldNets/bg_msud_fold17.RData
inst/networks/ind_foldNets/bg_msud_fold18.RData
inst/networks/ind_foldNets/bg_msud_fold2.RData
inst/networks/ind_foldNets/bg_msud_fold3.RData
inst/networks/ind_foldNets/bg_msud_fold4.RData
inst/networks/ind_foldNets/bg_msud_fold5.RData
inst/networks/ind_foldNets/bg_msud_fold6.RData
inst/networks/ind_foldNets/bg_msud_fold7.RData
inst/networks/ind_foldNets/bg_msud_fold8.RData
inst/networks/ind_foldNets/bg_msud_fold9.RData
inst/networks/ind_foldNets/bg_otc_fold1.RData
inst/networks/ind_foldNets/bg_otc_fold10.RData
inst/networks/ind_foldNets/bg_otc_fold11.RData
inst/networks/ind_foldNets/bg_otc_fold12.RData
inst/networks/ind_foldNets/bg_otc_fold13.RData
inst/networks/ind_foldNets/bg_otc_fold14.RData
inst/networks/ind_foldNets/bg_otc_fold15.RData
inst/networks/ind_foldNets/bg_otc_fold16.RData
inst/networks/ind_foldNets/bg_otc_fold17.RData
inst/networks/ind_foldNets/bg_otc_fold2.RData
inst/networks/ind_foldNets/bg_otc_fold3.RData
inst/networks/ind_foldNets/bg_otc_fold4.RData
inst/networks/ind_foldNets/bg_otc_fold5.RData
inst/networks/ind_foldNets/bg_otc_fold6.RData
inst/networks/ind_foldNets/bg_otc_fold7.RData
inst/networks/ind_foldNets/bg_otc_fold8.RData
inst/networks/ind_foldNets/bg_otc_fold9.RData
inst/networks/ind_foldNets/bg_pa_fold1.RData
inst/networks/ind_foldNets/bg_pa_fold2.RData
inst/networks/ind_foldNets/bg_pa_fold3.RData
inst/networks/ind_foldNets/bg_pa_fold4.RData
inst/networks/ind_foldNets/bg_pa_fold5.RData
inst/networks/ind_foldNets/bg_pa_fold6.RData
inst/networks/ind_foldNets/bg_pa_fold7.RData
inst/networks/ind_foldNets/bg_pa_fold8.RData
inst/networks/ind_foldNets/bg_pa_fold9.RData
inst/networks/ind_foldNets/bg_pku_fold1.RData
inst/networks/ind_foldNets/bg_pku_fold2.RData
inst/networks/ind_foldNets/bg_pku_fold3.RData
inst/networks/ind_foldNets/bg_pku_fold4.RData
inst/networks/ind_foldNets/bg_pku_fold5.RData
inst/networks/ind_foldNets/bg_pku_fold6.RData
inst/networks/ind_foldNets/bg_pku_fold7.RData
inst/networks/ind_foldNets/bg_pku_fold8.RData
inst/networks/ind_foldNets/bg_rcdp_fold1.RData
inst/networks/ind_foldNets/bg_rcdp_fold10.RData
inst/networks/ind_foldNets/bg_rcdp_fold11.RData
inst/networks/ind_foldNets/bg_rcdp_fold12.RData
inst/networks/ind_foldNets/bg_rcdp_fold13.RData
inst/networks/ind_foldNets/bg_rcdp_fold14.RData
inst/networks/ind_foldNets/bg_rcdp_fold15.RData
inst/networks/ind_foldNets/bg_rcdp_fold16.RData
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inst/ranks/noPruning_ranks/MSUD16-ranks.RData
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inst/ranks/noPruning_ranks/MSUD18-ranks.RData
inst/ranks/noPruning_ranks/MSUD2-ranks.RData
inst/ranks/noPruning_ranks/MSUD3-ranks.RData
inst/ranks/noPruning_ranks/MSUD4-ranks.RData
inst/ranks/noPruning_ranks/MSUD5-ranks.RData
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inst/ranks/noPruning_ranks/PA4-ranks.RData
inst/ranks/noPruning_ranks/PA5-ranks.RData
inst/ranks/noPruning_ranks/PA6-ranks.RData
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inst/ranks/noPruning_ranks/PKU1-ranks.RData
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inst/ranks/noPruning_ranks/PKU4-ranks.RData
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inst/ranks/noPruning_ranks/PKU6-ranks.RData
inst/ranks/noPruning_ranks/PKU7-ranks.RData
inst/ranks/noPruning_ranks/PKU8-ranks.RData
inst/shiny-app/Thistlethwaite2020.raw.RData
inst/shiny-app/disMod_July2020.RData
inst/shiny-app/disMod_Oct2020.RData
inst/shiny-app/metDataPortal_appFns.r
inst/shiny-app/metDataPortal_shiny_v1.0.R
inst/shiny-app/model/ptRanks_kmx30.RData
inst/shiny-app/shiny_msea.RData
man/data.HMDBtoKEGG.Rd
man/data.LabeltoKEGG.Rd
man/mle.blowoutSim.Rd
man/mle.kraftMcMillan.Rd
man/pathway.ListMaps_metabolon.Rd
man/pathway.ListMetabolites_metabolon.Rd
man/plot.hmSim.Rd
man/plot.knnSim.Rd
man/plot.mdsSim.Rd
man/plot.pathwayMap.Rd
man/plot.pathwayMap_CaseCntl.Rd
man/shiny.getMSEA_Metabolon.Rd
man/shiny.getORA_Metabolon.Rd
man/shiny.getPathwayIgraph.Rd
man/stat.getMSEA_Metabolon.Rd
man/stat.getORA_Metabolon.Rd
