Man pages for BRL-BCM/CTDext
Extension package for the CTD R package.
| data.HMDBtoKEGG | Convert HMDB IDs to KEGG compound IDs. |
| data.LabeltoKEGG | Convert compound names to KEGG compound IDs. |
| mle.blowoutSim | Module that best explains the patient similarity assigned... |
| mle.kraftMcMillan | Apply the Kraft-McMillian Inequality using a specific... |
| pathway.ListMaps_metabolon | Get All Metabolites In Metabolon's Pathway Knowledgebase |
| pathway.ListMetabolites_metabolon | Get All Metabolites In Metabolon's Pathway Knowledgebase |
| plot.hmSim | Generate heatmap plot of patient similarity matrix. |
| plot.knnSim | Visualize the confusion matrix using nearest neighbor as... |
| plot.mdsSim | View patient clusters using multi-dimensional scaling. |
| plot.pathwayMap | Generate pathway map with patient perturbation data... |
| plot.pathwayMap_CaseCntl | Generate pathway map with patient perturbation data... |
| shiny.getMSEA_Metabolon | Metabolite set enrichment analysis (MSEA) using pathway... |
| shiny.getORA_Metabolon | Metabolite set enrichment analysis (MSEA) (using a... |
| shiny.getPathwayIgraph | shiny.getPathwayIgraph |
| stat.getMSEA_Metabolon | Metabolite set enrichment analysis (MSEA) using pathway... |
| stat.getORA_Metabolon | Metabolite set enrichment analysis (MSEA) (using a... |
