Files in BWAM/stayCALM
Stay Calm when Applying a Consolidated Assessment Listing Methodology (CALM)
.Rbuildignore
.covrignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE.md
.github/SUPPORT.md
.github/workflows/R-CMD-check.yaml
.github/workflows/check-standard.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
.gitlab-ci.yml
.travis.yml
DESCRIPTION
LICENSE.md
NAMESPACE
R/assessment.R
R/assign.R
R/attaining.R
R/class_inheritance.R
R/dates.R
R/drafts.R
R/extract_param.R
R/formula.R
R/helpers.R
R/impairment.R
R/prep.R
R/prep_values.R
R/survey.R
R/thresh_ammonia.R
R/thresh_determination.R
R/thresh_hardness_correction.R
R/utils-pipe.R
R/utils-tidy-eval.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
data-raw/.gitignore
data-raw/aquatic-acute_prep.Rmd
data-raw/assessment_prep.Rmd
data-raw/assessment_test_2020-05-06.csv
data-raw/class-use_prep.Rmd
data-raw/class-use_prep.html
data-raw/dups.csv
data-raw/lmas_prep.Rmd
data-raw/lmas_prep.html
data-raw/nysdec_wqs.Rmd
data-raw/nysdec_wqs.html
data-raw/smas/.gitignore
data-raw/smas/2016_ribs_result.csv
data-raw/smas/2016_ribs_sample.csv
data-raw/smas/RIBSchem_historic_BioSiteJoin_2019-12-18.xlsx
data-raw/smas/cleaned/2016_ribs_result.csv
data-raw/smas/cleaned/2016_ribs_sample.csv
data-raw/smas/cleaned/20191224_Site_Field_cleaned_final.xlsx
data-raw/smas/cleaned/RIBSchem_historic_BioSiteJoin_2019-12-18.xlsx
data-raw/smas/cleaned/equis_location_history.csv
data-raw/smas/cleaned/equis_results_history.csv
data-raw/smas/cleaned/equis_sample_history.csv
data-raw/smas/equis_location_history.csv
data-raw/smas/equis_results_history.csv
data-raw/smas/equis_sample_history.csv
data-raw/smas_prep.Rmd
data-raw/smas_prep_18-19.Rmd
data-raw/smas_prep_18-19.html
data/.gitignore
data/aquatic_acute.rda
data/class_use.rda
data/lmas.df.rda
data/nysdec_wqs.rda
data/smas.df.rda
data/wipwl.df.rda
docs/.gitignore
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/ISSUE_TEMPLATE.html
docs/LICENSE.html
docs/SUPPORT.html
docs/articles/calm_logic.html
docs/articles/images/calm_decision-tree.png
docs/articles/images/wqs_logic/wqs-logic_aquatic_acute_v2.png
docs/articles/images/wqs_logic/wqs-logic_class-i_v2.png
docs/articles/images/wqs_logic/wqs-logic_do-ammonia_v2.png
docs/articles/images/wqs_logic/wqs-logic_general-uses_v3.png
docs/articles/images/wqs_logic/wqs-logic_general_v3.png
docs/articles/index.html
docs/articles/workflow.html
docs/articles/workflow_files/crosstalk-1.1.0.1/css/crosstalk.css
docs/articles/workflow_files/crosstalk-1.1.0.1/js/crosstalk.js
docs/articles/workflow_files/crosstalk-1.1.0.1/js/crosstalk.js.map
docs/articles/workflow_files/crosstalk-1.1.0.1/js/crosstalk.min.js
docs/articles/workflow_files/crosstalk-1.1.0.1/js/crosstalk.min.js.map
docs/articles/workflow_files/datatables-binding-0.13/datatables.js
docs/articles/workflow_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/workflow_files/dt-core-1.10.20/css/jquery.dataTables.extra.css
docs/articles/workflow_files/dt-core-1.10.20/css/jquery.dataTables.min.css
docs/articles/workflow_files/dt-core-1.10.20/js/jquery.dataTables.min.js
docs/articles/workflow_files/figure-html/unnamed-chunk-13-1.png
docs/articles/workflow_files/figure-html/unnamed-chunk-22-1.png
docs/articles/workflow_files/figure-html/unnamed-chunk-24-1.png
docs/articles/workflow_files/htmlwidgets-1.5.1/htmlwidgets.js
docs/articles/workflow_files/jquery-1.12.4/LICENSE.txt
docs/articles/workflow_files/jquery-1.12.4/jquery.min.js
docs/articles/wqs_logic.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/agg_eval_stat.html
docs/reference/assessment_id.html
docs/reference/assessment_min_counts.html
docs/reference/assessment_min_years.html
docs/reference/assessment_period.html
docs/reference/assign_assess_hier.html
docs/reference/assign_status.html
docs/reference/attaining.html
docs/reference/block_switch.html
docs/reference/class_inheritance.html
docs/reference/class_variants.html
docs/reference/clean_strings.html
docs/reference/date_standard_cols.html
docs/reference/date_subtraction.html
docs/reference/execute_formula.html
docs/reference/expand_df.html
docs/reference/extract_param.html
docs/reference/figures/README-pressure-1.png
docs/reference/geomean.html
docs/reference/group_id.html
docs/reference/hello.html
docs/reference/index.html
docs/reference/inherit.html
docs/reference/is_date.html
docs/reference/min_sample_check.html
docs/reference/none.html
docs/reference/parse_eval.html
docs/reference/pct_below.html
docs/reference/pct_below_240.html
docs/reference/pct_below_5000.html
docs/reference/pipe.html
docs/reference/prep_values.html
docs/reference/rolling.html
docs/reference/rolling_early.html
docs/reference/split_col.html
docs/reference/split_eval_stat.html
docs/reference/summarize_seg_assessment.html
docs/reference/survey.html
docs/reference/survey_indv.html
docs/reference/thresh_determination.html
docs/reference/thresh_hardness_correction.html
docs/reference/thresh_total_ammonia.html
docs/reference/thresh_unionized_ammonia.html
docs/reference/tidyeval.html
docs/reference/underscore.html
docs/reference/wqs_attaining.html
man/agg_eval_stat.Rd
man/assessment_min_counts.Rd
man/assessment_min_years.Rd
man/assessment_period.Rd
man/assign_assess_hier.Rd
man/assign_status.Rd
man/assign_trout_class.Rd
man/assign_wb_category.Rd
man/attaining.Rd
man/block_switch.Rd
man/class_inheritance.Rd
man/class_variants.Rd
man/clean_strings.Rd
man/date_standard_cols.Rd
man/date_subtraction.Rd
man/execute_formula.Rd
man/expand_df.Rd
man/extract_param.Rd
man/figures/README-pressure-1.png
man/geomean.Rd
man/group_id.Rd
man/hello.Rd
man/inherit.Rd
man/is_date.Rd
man/min_sample_check.Rd
man/none.Rd
man/parse_eval.Rd
man/pct_below.Rd
man/pct_below_240.Rd
man/pct_below_5000.Rd
man/pipe.Rd
man/prep_values.Rd
man/replacement.Rd
man/rolling.Rd
man/rolling_early.Rd
man/split_col.Rd
man/split_eval_stat.Rd
man/summarize_seg_assessment.Rd
man/survey.Rd
man/survey_indv.Rd
man/switch_wb_category.Rd
man/thresh_determination.Rd
man/thresh_hardness_correction.Rd
man/thresh_total_ammonia.Rd
man/thresh_unionized_ammonia.Rd
man/tidyeval.Rd
man/underscore.Rd
stayCALM.Rproj
tests/testthat.R
tests/testthat/test-assign_status.R
tests/testthat/test-attaining.R
tests/testthat/test-class_inheritance.R
useThis.R
vignettes/.gitignore
vignettes/calm_logic.Rmd
vignettes/images/bwam_data-flow.png
vignettes/images/calm_decision-tree.png
vignettes/images/wqs_logic/wqs-logic_ammonia.png
vignettes/images/wqs_logic/wqs-logic_aquatic_acute.png
vignettes/images/wqs_logic/wqs-logic_aquatic_acute_v2.png
vignettes/images/wqs_logic/wqs-logic_class-i.png
vignettes/images/wqs_logic/wqs-logic_class-i_v2.png
vignettes/images/wqs_logic/wqs-logic_dissolved-solids.png
vignettes/images/wqs_logic/wqs-logic_do-ammonia.png
vignettes/images/wqs_logic/wqs-logic_do-ammonia_v2.png
vignettes/images/wqs_logic/wqs-logic_do.png
vignettes/images/wqs_logic/wqs-logic_fecal-coliforms.png
vignettes/images/wqs_logic/wqs-logic_general-uses.png
vignettes/images/wqs_logic/wqs-logic_general-uses_v2.png
vignettes/images/wqs_logic/wqs-logic_general-uses_v3.png
vignettes/images/wqs_logic/wqs-logic_general.png
vignettes/images/wqs_logic/wqs-logic_general_v3.png
vignettes/images/wqs_logic/wqs-logic_total-coliforms.png
vignettes/images/wqs_logic/wqs_mercury_definition.png
vignettes/images/wqs_logic/wqs_use-type_table.png
vignettes/workflow.Rmd
vignettes/wqs_logic.Rmd
