Files in Bai-Li-NOAA/githubactiontest
.Rbuildignore
.github/.gitignore
.github/workflows/check-macOS.yaml
.github/workflows/check-windows-r3.6.3.yml
.github/workflows/check-windows.yaml
.github/workflows/quick_windows_test.yml
.github/workflows/remote_githubinstall_test.yml
.gitignore
DESCRIPTION
NAMESPACE
R/1_utils.R
R/OM_MsyCalcs.R
R/OM_ObservationModel.R
R/OM_PopSim.R
R/OM_baranov_catch.R
R/OM_deviation_generator.R
R/OM_f_case.R
R/OM_stock_recruit_model.R
R/check_convergence.R
R/check_performance.R
R/generate_plot.R
R/hello.R
R/plot_agecomp_individual_iteration.R
R/plot_em_re.R
R/plot_em_residual_boxplot.R
R/plot_msy_re.R
R/plot_ratio_inidividual_iteration.R
R/plot_stock_status_determination.R
R/plot_timeseries_all_iterations.R
R/plot_timeseries_inidividual_iteration.R
R/read_plot_data.R
R/run_amak.R
R/run_asap.R
R/run_bam.R
R/run_em.R
R/run_mas.R
R/run_om.R
R/run_ss.R
R/write_bam_dat.R
README.md
example/em_input/ASAP3.exe
example/em_input/BAM-Sim.exe
example/em_input/BAM.DatInput.Parms.xlsx
example/em_input/RMAS.dll
example/em_input/amak.dat
example/em_input/amak.exe
example/em_input/amak_data.dat
example/em_input/asap3.DAT
example/em_input/control.ss
example/em_input/data.ss
example/em_input/forecast.ss
example/em_input/mas.R
example/em_input/ss.exe
example/em_input/starter.ss
example/em_input/wtatage.ss
example/example.R
example/figure/Abundance_all_iterations.jpg
example/figure/Abundance_re_comparison.jpg
example/figure/Biomass_all_iterations.jpg
example/figure/Biomass_re_comparison.jpg
example/figure/F_all_iterations.jpg
example/figure/F_re_comparison.jpg
example/figure/Fig102_ratio_inidividual_iteration.jpg
example/figure/Fig102_timeseries_inidividual_iteration.jpg
example/figure/Fig105_ratio_inidividual_iteration.jpg
example/figure/Fig105_timeseries_inidividual_iteration.jpg
example/figure/Fig10_agecomp_last.jpg
example/figure/Fig113_ratio_inidividual_iteration.jpg
example/figure/Fig113_timeseries_inidividual_iteration.jpg
example/figure/Fig120_ratio_inidividual_iteration.jpg
example/figure/Fig120_timeseries_inidividual_iteration.jpg
example/figure/Fig138_ratio_inidividual_iteration.jpg
example/figure/Fig138_timeseries_inidividual_iteration.jpg
example/figure/Fig150_ratio_inidividual_iteration.jpg
example/figure/Fig150_timeseries_inidividual_iteration.jpg
example/figure/Fig16_ratio_inidividual_iteration.jpg
example/figure/Fig16_timeseries_inidividual_iteration.jpg
example/figure/Fig19_ratio_inidividual_iteration.jpg
example/figure/Fig19_timeseries_inidividual_iteration.jpg
example/figure/Fig1_agecomp_last.jpg
example/figure/Fig1_ratio_inidividual_iteration.jpg
example/figure/Fig1_timeseries_inidividual_iteration.jpg
example/figure/Fig27_ratio_inidividual_iteration.jpg
example/figure/Fig27_timeseries_inidividual_iteration.jpg
example/figure/Fig2_agecomp_last.jpg
example/figure/Fig36_ratio_inidividual_iteration.jpg
example/figure/Fig36_timeseries_inidividual_iteration.jpg
example/figure/Fig3_agecomp_last.jpg
example/figure/Fig3_ratio_inidividual_iteration.jpg
example/figure/Fig3_timeseries_inidividual_iteration.jpg
example/figure/Fig4_agecomp_last.jpg
example/figure/Fig51_ratio_inidividual_iteration.jpg
example/figure/Fig51_timeseries_inidividual_iteration.jpg
example/figure/Fig5_agecomp_last.jpg
example/figure/Fig60_ratio_inidividual_iteration.jpg
example/figure/Fig60_timeseries_inidividual_iteration.jpg
example/figure/Fig63_ratio_inidividual_iteration.jpg
example/figure/Fig63_timeseries_inidividual_iteration.jpg
example/figure/Fig6_agecomp_last.jpg
example/figure/Fig73_ratio_inidividual_iteration.jpg
example/figure/Fig73_timeseries_inidividual_iteration.jpg
example/figure/Fig77_ratio_inidividual_iteration.jpg
example/figure/Fig77_timeseries_inidividual_iteration.jpg
example/figure/Fig7_agecomp_last.jpg
example/figure/Fig88_ratio_inidividual_iteration.jpg
example/figure/Fig88_timeseries_inidividual_iteration.jpg
example/figure/Fig89_ratio_inidividual_iteration.jpg
example/figure/Fig89_timeseries_inidividual_iteration.jpg
example/figure/Fig8_agecomp_last.jpg
example/figure/Fig9_agecomp_last.jpg
example/figure/Fratio_all_iterations.jpg
example/figure/Fratio_re_comparison.jpg
example/figure/Gradient_no_outliers.jpg
example/figure/Landings_all_iterations.jpg
example/figure/Landings_re_comparison.jpg
example/figure/MAS _residual_boxplot.jpg
example/figure/Recruitment_all_iterations.jpg
example/figure/Recruitment_re_comparison.jpg
example/figure/SSB_all_iterations.jpg
example/figure/SSB_re_comparison.jpg
example/figure/SSBratio_all_iterations.jpg
example/figure/SSBratio_re_comparison.jpg
example/figure/Survey Index_all_iterations.jpg
example/figure/Survey Index_re_comparison.jpg
example/figure/msy_re_sim.jpg
example/github_actions_test.R
example/output/MAS/mas.log
example/output/OM/OM1.RData
githubactiontest.Rproj
man/hello.Rd
