Man pages for BenaroyaResearch/limmaTools
Helper functions for limma analysis and visualization of results
| filterGoanaOutput | Filter annotation enrichment output from goana |
| get_counts_sig_genes | Extract counts of differentially expressed genes |
| get_sig_genes | Output text files with lists of significant genes |
| get_topGenes_combined | Construction of combined topGenes object from a set of... |
| get_xy_lims | Accessory function for determining x and y limits for volcano... |
| plot_gene_heatmap | Plot a heatmap of gene expression counts |
| plot_volcano_2var | Generate a volcano plot of genes from a differential... |
| plot_volcano_byvar_2var | Generate a volcano plot of genes from a differential... |
| plot_volcano_byvar_nvars | Generate a set of volcano plots of genes from a differential... |
| plot_volcano_nvars | Generate a set of volcano plots of genes from a differential... |
| write_sig_genes | Output text files with lists of significant genes |
| write_sig_genes_flexible | Use adaptive thresholds to export a set of significantly... |
