Benjamin-Vincent-Lab/PostRNASeqAlign: Functions for writing commands and post processing the Star Salmon pipeline.

Given a sample data matrix that indicate the sample name, sample folder name and input paths this script can write out pipeline commands to run star salmon on the cluster and post process the data into ucsc_isoform_counts.tsv and hgnc_entrezid_gene_counts.tsv. Only ucsc pipeline outputs are handled at this time.

install.packages("remotes")
remotes::install_github("Benjamin-Vincent-Lab/PostRNASeqAlign")