| accept_package | Accept a package on the tracker | 
| add_data_experiment_permisions | Helper function to Add Data Experiment Permissions | 
| add_packages | Add packages to SVN | 
| add_software_permisions | Helper function to Add Software Permissions | 
| add_to_spreadsheet | Add packages to the tracking worksheet | 
| as.issue | Coerce to an issue object | 
| assign_new_packages | Assign new packages | 
| assign_package | Assign a specific package | 
| bioc_views_classification | Extract and validiate biocViews terms from tarball | 
| clean | Clean a Software Package | 
| clean_data_package | Clean and copy a Data Experiment package | 
| devteam | Members of the devteam | 
| download | Download attachments from an issue | 
| edit_data_experiment_permissions | Edit the data experiment permissions | 
| edit_software_permissions | Edit the software permissions | 
| Extract the email from an object | |
| emailMaintainer | Email a new user their credentials | 
| gh_issue | Retrieve all messages associated with an issue | 
| gh_packages_assigned_to | Show packages assigned to a github user | 
| gh_pre_accepted_packages | Show pre-accepted packages | 
| gh_tracker_search | Query the issue tracker | 
| gh_unassigned_packages | Show unassigned packages | 
| github_usernames | and their github usernames | 
| issue | Retrieve all of the messages from an issue | 
| maintainers | Retrieve the maintainers from a tarball | 
| make_github_request | Make a GitHub API request using an OAuth token | 
| match_user | See if a person already exists in the user db | 
| package_assignment_email | Generate the package assignments email given code to run | 
| package_name | Extract a packages name from a tarball | 
| post | Post a message to an issue | 
| proj_path | Path to file (in the unix sense) within the project | 
| read_permissions | Read authz permission file | 
| request_credentials | Request new credentials for users | 
| run_commands | Run commands on a file, possibly remote. | 
| standard_commit_message | Generate a standard commit message for permission edits | 
| status_map | Status code to name mapping | 
| svn | Declare an SVN instance | 
| svn_auth_text | Update svn authz files | 
| tabulate_activity | Tabulate tracker activity | 
| the | storage object | 
| tracker_login | Login to the issue tracker | 
| tracker_search | Query the issue tracker | 
| user_db | Retrieve the remote user database | 
| users | Retrieve the user list | 
| utilFunctions | Convenience functions for managing behind the scenes... | 
| workflow_standard | Workflow steps | 
| write_permissions | Write authz permission file | 
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