API for Bioconductor/BiocGenerics
S4 generic functions used in Bioconductor

Global functions
%in%	Man page
.S4_object_contains_out_of_memory_data	Source code
.attach_namespace	Source code
.basename.useAsDefault	Source code
.dirname.useAsDefault	Source code
.environment_contains_out_of_memory_data	Source code
.get_data_frame_type	Source code
.is.rank.useAsDefault	Source code
.is.unsorted.useAsDefault	Source code
.list_contains_out_of_memory_data	Source code
.match.useAsDefault	Source code
.paste2_array_array	Source code
.paste2_array_vector	Source code
.paste2_vector_vector	Source code
.table.useAsDefault	Source code
.test	Source code
.which.max.useAsDefault	Source code
.which.min.useAsDefault	Source code
AsIs-class	Man page
BiocGenerics	Man page
BiocGenerics-package	Man page
Extremes	Man page
Filter	Man page
Find	Man page
IQR	Man page
Map	Man page
NCOL	Man page
NROW	Man page
Ontology	Man page
OutOfMemoryObject	Man page
OutOfMemoryObject-class	Man page
Position	Man page
Reduce	Man page
S3-classes-as-S4-classes	Man page
add_prefix	Man page Source code
add_suffix	Man page Source code
annotation	Man page
annotation<-	Man page
anyDuplicated	Man page
aperm	Man page
append	Man page
as.data.frame	Man page
as.list	Man page
as.vector	Man page
attach_classdef_and_updateobjdef_pkgs	Source code
basename	Man page
basename,ANY-method	Man page
basename<-	Man page
basename<-,ANY-method	Man page
basename<-,character-method	Man page
boxplot	Man page
bzfile-class	Man page
cbind	Man page
character_OR_connection-class	Man page
class:OutOfMemoryObject	Man page
colnames	Man page
colnames<-	Man page
combine	Man page
combine,ANY,missing-method	Man page
combine,data.frame,data.frame-method	Man page
combine,matrix,matrix-method	Man page
conditions	Man page
conditions<-	Man page
connection-class	Man page
containsOutOfMemoryData	Man page
containsOutOfMemoryData,ANY-method	Man page
containsOutOfMemoryData,OutOfMemoryObject-method	Man page
containsOutOfMemoryData,environment-method	Man page
containsOutOfMemoryData,list-method	Man page
counts	Man page
counts<-	Man page
dbconn	Man page
dbfile	Man page
density	Man page
design	Man page
design<-	Man page
dge	Man page
dims	Man page
dirname	Man page
dirname,ANY-method	Man page
dirname<-	Man page
dirname<-,ANY-method	Man page
dirname<-,character-method	Man page
dispTable	Man page
dispTable<-	Man page
dist-class	Man page
do.call	Man page
duplicated	Man page
end	Man page
end<-	Man page
estimateDispersions	Man page
estimateSizeFactors	Man page
eval	Man page
evalq	Man page Source code
extraArgsAsList	Source code
extract_data_frame_slice0	Source code
fifo-class	Man page
file-class	Man page
fileName	Man page
format	Man page
format.list	Man page
funprog	Man page
get	Man page
getObjectFields	Source code
getObjectSlots	Man page Source code
grep	Man page
grepl	Man page
gzcon-class	Man page
gzfile-class	Man page
image	Man page
intersect	Man page
invertStrand	Man page
invertStrand,ANY-method	Man page
is.unsorted	Man page
isTRUEorFALSE	Source code
lapply	Man page
mad	Man page
mapply	Man page
match	Man page
mean	Man page
mget	Man page
ncol	Man page
ncols	Man page
normalize	Man page
nrow	Man page
nrows	Man page
order	Man page
organism	Man page
organism<-	Man page
organism_species	Man page
packageInfo	Source code
packageRoot	Source code
paste	Man page
paste2	Man page
paste2,ANY,ANY-method	Man page
paste2,ANY,array-method	Man page
paste2,array,ANY-method	Man page
paste2,array,array-method	Man page
path	Man page
path<-	Man page
pipe-class	Man page
plotDispEsts	Man page
plotMA	Man page
plotMA,ANY-method	Man page
plotPCA	Man page
pmax	Man page
pmax.int	Man page
pmin	Man page
pmin.int	Man page
pos	Man page
rank	Man page
rbind	Man page
relist	Man page
rep.int	Man page
replaceSlots	Source code
residuals	Man page
row+colnames	Man page
rownames	Man page
rownames<-	Man page
sapply	Man page
saveRDS	Man page
saveRDS,ANY-method	Man page
score	Man page
score<-	Man page
sd	Man page
setdiff	Man page
setequal	Man page
setops	Man page
sets	Man page
sizeFactors	Man page
sizeFactors<-	Man page
sockconn-class	Man page
sort	Man page
species	Man page
species<-	Man page
start	Man page
start<-	Man page
strand	Man page
strand<-	Man page
subset	Man page
t	Man page
table	Man page
table-class	Man page
tapply	Man page
terminal-class	Man page
testPackage	Man page Source code
textConnection-class	Man page
toTable	Man page
to_string	Source code
type	Man page
type,array-method	Man page
type,data.frame-method	Man page
type,factor-method	Man page
type,vector-method	Man page
type<-	Man page
type<-,array-method	Man page
type<-,vector-method	Man page
union	Man page
unique	Man page
unlist	Man page
unsafe_replaceSlots	Source code
unsplit	Man page
unstrand	Man page Source code
unused_arguments_msg	Source code
unz-class	Man page
updateObject	Man page
updateObject,ANY-method	Man page
updateObject,envRefClass-method	Man page
updateObject,environment-method	Man page
updateObject,formula-method	Man page
updateObject,list-method	Man page
updateObjectFromFields	Source code
updateObjectFromSlots	Man page Source code
updateObjectFrom_errf	Source code
url-class	Man page
var	Man page
weights	Man page
which	Man page
which.max	Man page
which.min	Man page
width	Man page
width<-	Man page
xtabs	Man page
xtabs-class	Man page