API for Bioconductor/BiocParallel
Bioconductor facilities for parallel evaluation

Global functions
.BiocParallelParam_prototype Man page
.DONE Source code
.EXEC Source code
.NULLRegistry Source code
.NULLcluster Source code
.RNGstream Source code
.VALUE Source code
.batch_bptimeout Source code
.batchtoolsClusterAvailable Source code
.bpallok Source code
.bpeltok Source code
.bpforkChild Source code
.bpforkConnect Source code
.bpinit Source code
.bpiterate_impl Man page Source code
.bplapply_impl Man page Source code
.bploop_impl Source code
.bploop_iterate_iter Source code
.bploop_lapply_iter Source code
.bploop_rng_iter Source code
.bpnextRNGstream Source code
.bpparamOptions Source code
.bpregistryargs Source code
.bpresources Source code
.bpsaveregistry Source code
.bpsaveregistry_path Source code
.bpstart_error_handler Source code
.bpstart_impl Man page Source code
.bpstart_makeCluster Source code
.bpstart_set_finalizer Source code
.bpstart_set_rng_stream Source code
.bpstop_impl Man page Source code
.bpstop_nodes Source code
.bptemplate Source code
.bpvalidateEnvironment Source code
.bpvalidateSymbol Source code
.bpvalidateUnknown Source code
.bpworker_EXEC Source code
.bpworker_impl Man page Source code
.bpwriteLog Source code
.clean_task_static Source code
.clear_cluster Source code
.close Man page
.close,ANY-method Man page
.close,TransientMulticoreParam-method Man page
.collect_result Source code
.composeBatchtools Source code
.composeTry Source code
.connect_timeout Source code
.controlled Source code
.defaultWorkers Source code
.dir_valid_rw Source code
.enforceWorkers Source code
.error Source code
.error_bplist Source code
.error_not_available Source code
.error_remote Source code
.error_unevaluated Source code
.error_worker_comm Source code
.filterDefaultPackages Source code
.filterLibraries Source code
.findVariables Source code
.getDotsForMapply Source code
.hostname Source code
.iterateReducer Source code
.lapplyReducer Source code
.load_task_static Source code
.log_buffer_append Source code
.log_buffer_get Source code
.log_buffer_init Source code
.log_error Source code
.log_load Source code
.log_warn Source code
.manager Man page
.manager,ANY-method Man page
.manager,DoparParam-method Man page
.manager,SnowParam-method Man page
.manager,TransientMulticoreParam-method Man page
.manager_ANY Source code
.manager_capacity Man page
.manager_capacity,ANY-method Man page
.manager_capacity,DoparParamManager-method Man page
.manager_capacity,TaskManager-method Man page
.manager_cleanup Man page
.manager_cleanup,ANY-method Man page
.manager_cleanup,SOCKmanager-method Man page
.manager_cleanup,TaskManager-method Man page
.manager_flush Man page
.manager_flush,ANY-method Man page
.manager_flush,TaskManager-method Man page
.manager_log Source code
.manager_recv Man page
.manager_recv,ANY-method Man page
.manager_recv,DoparParamManager-method Man page
.manager_recv,TaskManager-method Man page
.manager_recv_all Man page
.manager_recv_all,ANY-method Man page
.manager_recv_all,DoparParamManager-method Man page
.manager_recv_all,TaskManager-method Man page
.manager_result_save Source code
.manager_send Man page
.manager_send,ANY-method Man page
.manager_send,DoparParamManager-method Man page
.manager_send,SOCKmanager-method Man page
.manager_send,TaskManager-method Man page
.manager_send_all Man page
.manager_send_all,ANY-method Man page
.manager_send_all,DoparParamManager-method Man page
.manager_send_all,TaskManager-method Man page
.ntask Source code
.port Source code
.prettyPath Source code
.progress Source code
.prototype_update Man page Source code
.recv Man page
.recv,ANY-method Man page
.recv,SOCKnode-method Man page
.recv,TransientMulticoreParam-method Man page
.recv_all Man page
.recv_all,ANY-method Man page
.recv_all,TransientMulticoreParam-method Man page
.recv_any Man page
.recv_any,ANY-method Man page
.recv_any,SerialBackend-method Man page
.recv_any,TransientMulticoreParam-method Man page
.redo_env Source code
.redo_index Source code
.redo_index_iterate Source code
.redo_reducer Source code
.redo_seed Source code
.registerOption Man page Source code
.registeredOptions Source code
.registry_init Source code
.rename Source code
.rng_get_generator Source code
.rng_init_stream Source code
.rng_iterate_substream Source code
.rng_next_stream Source code
.rng_next_substream Source code
.rng_reset_generator Source code
.send Man page
.send,ANY-method Man page
.send,TransientMulticoreParam-method Man page
.send_all Man page
.send_all,ANY-method Man page
.send_to Man page
.send_to,ANY-method Man page
.send_to,SerialBackend-method Man page
.send_to,TransientMulticoreParam-method Man page
.show_bpvalidateSearch Source code
.show_bpvalidateUnknown Source code
.simplify Source code
.snowCores Source code
.snowCoresMax Source code
.snowHost Source code
.snowPort Source code
.splitX Source code
.stop Source code
.task_const Man page Source code
.task_dynamic Man page Source code
.task_remake Man page Source code
.transposeArgsWithIterations Source code
.validateBpoptions Source code
.warning Source code
.workerEnvironmentVariable Source code
.workerLapply_impl Source code
.workerOptions Source code
BIOCPARALLEL_WORKER_MAX Man page
BIOCPARALLEL_WORKER_NUMBER Man page
BPValidate Source code
BPValidate-class Man page
BatchJobsParam Man page Source code
BatchtoolsParam Man page Source code
BatchtoolsParam-class Man page
BiocParallel Man page
BiocParallel-deprecated Man page
BiocParallel-package Man page
BiocParallelParam Man page
BiocParallelParam-class Man page
DoparParam Man page Source code
DoparParam-class Man page
MulticoreParam Man page Source code
MulticoreParam-class Man page
R_PARALLELLY_AVAILABLECORES_FALLBACK Man page
SerialParam Man page Source code
SerialParam-class Man page
SnowParam Man page Source code
SnowParam-class Man page
TransientMulticoreParam Source code
`.RNGstream<-` Source code
`.bpparamOptions<-` Source code
`.redo_env<-` Source code
`.redo_reducer<-` Source code
`.redo_seed<-` Source code
`print.bplist_error` Source code
batchtoolsCluster Man page Source code
batchtoolsRegistryargs Man page Source code
batchtoolsTemplate Man page Source code
batchtoolsWorkers Man page Source code
bpRNGseed Man page
bpRNGseed,BatchtoolsParam-method Man page
bpRNGseed,BiocParallelParam-method Man page
bpRNGseed<- Man page
bpRNGseed<-,BatchtoolsParam,numeric-method Man page
bpRNGseed<-,BiocParallelParam,NULL-method Man page
bpRNGseed<-,BiocParallelParam,numeric-method Man page
bpaggregate Man page
bpaggregate,ANY,missing-method Man page
bpaggregate,data.frame,BiocParallelParam-method Man page
bpaggregate,formula,BiocParallelParam-method Man page
bpaggregate,matrix,BiocParallelParam-method Man page
bpbackend Man page
bpbackend,BatchtoolsParam-method Man page
bpbackend,DoparParam-method Man page
bpbackend,SerialParam-method Man page
bpbackend,SnowParam-method Man page
bpbackend,TransientMulticoreParam-method Man page
bpbackend,missing-method Man page
bpbackend<- Man page
bpbackend<-,DoparParam,SOCKcluster-method Man page
bpbackend<-,SnowParam,cluster-method Man page
bpbackend<-,missing,ANY-method Man page
bperrorTypes Man page Source code
bpexportglobals Man page
bpexportglobals,BiocParallelParam-method Man page
bpexportglobals<- Man page
bpexportglobals<-,BiocParallelParam,logical-method Man page
bpexportvariables Man page
bpexportvariables,BiocParallelParam-method Man page
bpexportvariables<- Man page
bpexportvariables<-,BiocParallelParam,logical-method Man page
bpfallback Man page
bpfallback,BiocParallelParam-method Man page
bpfallback<- Man page
bpfallback<-,BiocParallelParam,logical-method Man page
bpforceGC Man page
bpforceGC,BiocParallelParam-method Man page
bpforceGC<- Man page
bpforceGC<-,BiocParallelParam,numeric-method Man page
bpisup Man page
bpisup,ANY-method Man page
bpisup,BatchtoolsParam-method Man page
bpisup,DoparParam-method Man page
bpisup,MulticoreParam-method Man page
bpisup,SerialParam-method Man page
bpisup,SnowParam-method Man page
bpisup,missing-method Man page
bpiterate Man page
bpiterate,ANY,ANY,BatchtoolsParam-method Man page
bpiterate,ANY,ANY,BiocParallelParam-method Man page
bpiterate,ANY,ANY,DoparParam-method Man page
bpiterate,ANY,ANY,SerialParam-method Man page
bpiterate,ANY,ANY,SnowParam-method Man page
bpiterate,ANY,ANY,missing-method Man page
bpiterateAlong Man page Source code
bpjobname Man page
bpjobname,BiocParallelParam-method Man page
bpjobname<- Man page
bpjobname<-,BiocParallelParam,character-method Man page
bplapply Man page
bplapply,ANY,BatchtoolsParam-method Man page
bplapply,ANY,BiocParallelParam-method Man page
bplapply,ANY,DoparParam-method Man page
bplapply,ANY,SerialParam-method Man page
bplapply,ANY,SnowParam-method Man page
bplapply,ANY,list-method Man page
bplapply,ANY,missing-method Man page
bplog Man page
bplog,BiocParallelParam-method Man page
bplog,SerialParam-method Man page
bplog,SnowParam-method Man page
bplog<- Man page
bplog<-,SerialParam,logical-method Man page
bplog<-,SnowParam,logical-method Man page
bplogdir Man page
bplogdir,BatchtoolsParam-method Man page
bplogdir,BiocParallelParam-method Man page
bplogdir,SerialParam-method Man page
bplogdir<- Man page
bplogdir<-,BatchtoolsParam,character-method Man page
bplogdir<-,BiocParallelParam,character-method Man page
bplogdir<-,SerialParam,character-method Man page
bploop Man page Source code
bploop.iterate Man page Source code
bploop.iterate_batchtools Source code
bploop.lapply Man page Source code
bpmapply Man page
bpmapply,ANY,BiocParallelParam-method Man page
bpmapply,ANY,list-method Man page
bpmapply,ANY,missing-method Man page
bpnworkers Man page Source code
bpok Man page Source code
bpoptions Man page Source code
bpparam Man page Source code
bpprogressbar Man page
bpprogressbar,BiocParallelParam-method Man page
bpprogressbar<- Man page
bpprogressbar<-,BiocParallelParam,logical-method Man page
bpresult Man page Source code
bpresultdir Man page
bpresultdir,BiocParallelParam-method Man page
bpresultdir<- Man page
bpresultdir<-,BiocParallelParam,character-method Man page
bprunMPIslave Man page Source code
bprunMPIworker Man page Source code
bpschedule Man page
bpschedule,ANY-method Man page
bpschedule,BatchtoolsParam-method Man page
bpschedule,MulticoreParam-method Man page
bpschedule,missing-method Man page
bpstart Man page
bpstart,ANY-method Man page
bpstart,BatchtoolsParam-method Man page
bpstart,BiocParallelParam-method Man page
bpstart,DoparParam-method Man page
bpstart,SerialParam-method Man page
bpstart,SnowParam-method Man page
bpstart,TransientMulticoreParam-method Man page
bpstart,missing-method Man page
bpstop Man page
bpstop,ANY-method Man page
bpstop,BatchtoolsParam-method Man page
bpstop,BiocParallelParam-method Man page
bpstop,DoparParam-method Man page
bpstop,SerialParam-method Man page
bpstop,SnowParam-method Man page
bpstop,TransientMulticoreParam-method Man page
bpstop,missing-method Man page
bpstopOnError Man page
bpstopOnError,BiocParallelParam-method Man page
bpstopOnError<- Man page
bpstopOnError<-,BiocParallelParam,logical-method Man page
bpstopOnError<-,DoparParam,logical-method Man page
bptasks Man page
bptasks,BiocParallelParam-method Man page
bptasks<- Man page
bptasks<-,BiocParallelParam,ANY-method Man page
bptasks<-,BiocParallelParam-method Man page
bpthreshold Man page
bpthreshold,BiocParallelParam-method Man page
bpthreshold,SnowParam-method Man page
bpthreshold<- Man page
bpthreshold<-,SerialParam,character-method Man page
bpthreshold<-,SnowParam,character-method Man page
bptimeout Man page
bptimeout,BiocParallelParam-method Man page
bptimeout<- Man page
bptimeout<-,BiocParallelParam,numeric-method Man page
bptry Man page Source code
bpvalidate Man page Source code
bpvec Man page
bpvec,ANY,BiocParallelParam-method Man page
bpvec,ANY,list-method Man page
bpvec,ANY,missing-method Man page
bpvectorize Man page
bpvectorize,ANY,ANY-method Man page
bpvectorize,ANY,missing-method Man page
bpworkers Man page
bpworkers,BatchtoolsParam-method Man page
bpworkers,BiocParallelParam-method Man page
bpworkers,DoparParam-method Man page
bpworkers,SerialParam-method Man page
bpworkers,SnowParam-method Man page
bpworkers,missing-method Man page
bpworkers<- Man page
bpworkers<-,MulticoreParam,numeric-method Man page
bpworkers<-,SnowParam,character-method Man page
bpworkers<-,SnowParam,numeric-method Man page
coerce,SOCKcluster,DoparParam-method Man page
coerce,SOCKcluster,SnowParam-method Man page
coerce,spawnedMPIcluster,SnowParam-method Man page
cpp_ipc_lock Source code
cpp_ipc_locked Source code
cpp_ipc_remove Source code
cpp_ipc_reset Source code
cpp_ipc_try_lock Source code
cpp_ipc_unlock Source code
cpp_ipc_uuid Source code
cpp_ipc_value Source code
cpp_ipc_yield Source code
ipcid Man page Source code
ipclock Man page Source code
ipclocked Man page Source code
ipcremove Man page Source code
ipcreset Man page Source code
ipctrylock Man page Source code
ipcunlock Man page Source code
ipcvalue Man page Source code
ipcyield Man page Source code
length,SerialBackend-method Man page
length,TransientMulticoreParam-method Man page
multicoreWorkers Man page Source code
print.NULLRegistry Source code
print.remote_error Man page Source code
register Man page Source code
registered Man page Source code
show,BPValidate-method Man page
show,BatchtoolsParam-method Man page
show,BiocParallel-method Man page
show,DoparParam-method Man page
show,MulticoreParam-method Man page
show,SnowParam-method Man page
snowWorkers Man page Source code
Bioconductor/BiocParallel documentation built on Oct. 31, 2024, 6:58 a.m.