Man pages for Bishop-Laboratory/correlationAnalyzeR
Generate Novel Insights from Gene Correlation Data
| analyzeGenePairs | Analyze Gene Pairs |
| analyzeGenesetTopology | Analyze Gene List Topology |
| analyzeSingleGenes | Analyze Single Genes |
| blackListHuman | A vector of blacklisted tissue-disease categories for human... |
| fixStrings | Fix strings (helper function) |
| generateCorrelations | Generate a correlation matrix from user-supplied data |
| geneVsGeneListAnalyze | Analyze gene vs gene list relationship |
| getAvailableGenes | Get Available Genes (helper function) |
| getCorrelationData | Get Gene Correlation Data |
| getTERM2GENE | Obtains TERM2GENE object for corGSEA |
| getTissueTypes | Get available tissue types |
| getTissueVST | Get VST values for tissues and gene of interest |
| hsapiens_corrSmall_geneNames | A vector of valid human genes to extract correlations from |
| human_coldata | A data frame of sample info from GEO (human) |
| humanGenesVST | A vector of valid human genes with VST data available |
| human_grouplist | A list of sample categorizations (human) |
| MSIGDB_Geneset_Names | A vector of valid MSIGDB geneset names |
| MSIGDB_Geneset_Small_Names | A vector of valid MSIGDB geneset names with fewer then 500... |
| myGSEA | Wrapper for clusterProlifer's GSEA() |
| pathwayCategories | A vector containing the names of valid TERM2GENE categories... |
| sampleVSTOrderHuman | A vector containing the order of human samples in the... |
