Files in BlasBenito/distantia

Advanced Toolset for Efficient Time Series Dissimilarity Analysis

LICENSE.md NEWS.md R/RcppExports.R R/color_continuous.R R/color_discrete.R R/data.R R/distance.R R/distance_matrix.R R/distantia-package.R R/distantia.R R/distantia_aggregate.R R/distantia_boxplot.R R/distantia_cluster_hclust.R R/distantia_cluster_kmeans.R R/distantia_dtw.R R/distantia_dtw_plot.R R/distantia_ls.R R/distantia_matrix.R R/distantia_model_frame.R R/distantia_spatial.R R/distantia_stats.R R/distantia_time_delay.R R/globals.R R/momentum.R R/momentum_aggregate.R R/momentum_boxplot.R R/momentum_dtw.R R/momentum_ls.R R/momentum_model_frame.R R/momentum_spatial.R R/momentum_stats.R R/momentum_to_wide.R R/psi_auto_distance.R R/psi_auto_sum.R R/psi_cost_matrix.R R/psi_cost_path.R R/psi_cost_path_sum.R R/psi_distance_lock_step.R R/psi_distance_matrix.R R/psi_equation.R R/transformations.R R/tsl_aggregate.R R/tsl_burst.R R/tsl_colnames.R R/tsl_count_NA.R R/tsl_diagnose.R R/tsl_handle_NA.R R/tsl_initialize.R R/tsl_join.R R/tsl_names.R R/tsl_ncol.R R/tsl_nrow.R R/tsl_plot.R R/tsl_repair.R R/tsl_resample.R R/tsl_simulate.R R/tsl_smooth.R R/tsl_stats.R R/tsl_subset.R R/tsl_time.R R/tsl_to_df.R R/tsl_transform.R R/utils_as_time.R R/utils_block_size.R R/utils_boxplot_common.R R/utils_check_args.R R/utils_check_list_class.R R/utils_clean_names.R R/utils_cluster_hclust_optimizer.R R/utils_cluster_kmeans_optimizer.R R/utils_cluster_silhouette.R R/utils_coerce_time_class.R R/utils_color_breaks.R R/utils_digits.R R/utils_distantia_df_split.R R/utils_drop_geometry.R R/utils_global_scaling_params.R R/utils_is_time.R R/utils_line_color.R R/utils_line_guide.R R/utils_matrix_guide.R R/utils_matrix_plot.R R/utils_new_time.R R/utils_optimize_loess.R R/utils_optimize_spline.R R/utils_prepare_df.R R/utils_prepare_matrix.R R/utils_prepare_matrix_list.R R/utils_prepare_time.R R/utils_prepare_vector_list.R R/utils_prepare_zoo_list.R R/utils_rescale_vector.R R/utils_time_keywords.R R/utils_time_keywords_dictionary.R R/utils_time_keywords_translate.R R/utils_time_units.R R/utils_tsl_pairs.R R/zoo_aggregate.R R/zoo_names.R R/zoo_permute.R R/zoo_plot.R R/zoo_resample.R R/zoo_simulate.R R/zoo_smooth_exponential.R R/zoo_smooth_window.R R/zoo_time.R R/zoo_to_tsl.R R/zoo_vector_to_matrix.R R/zzz.R README.Rmd README.md cran-comments.md data_full/waxwings/processing.R dev_scripts/albatross.R dev_scripts/code_coverage.R dev_scripts/counties.R dev_scripts/create_test_files.R dev_scripts/data.R dev_scripts/debugging_orthogonal_dtw.R dev_scripts/dependencies_graph.R dev_scripts/distances.R dev_scripts/github_actions.R dev_scripts/install.R dev_scripts/linting.R dev_scripts/logo.R dev_scripts/predictors_and_honeycomb.R dev_scripts/rhub.R dev_scripts/roxyglobals.R dev_scripts/valgrind.R man/albatross.Rd man/auto_distance_cpp.Rd man/auto_sum_cpp.Rd man/auto_sum_full_cpp.Rd man/auto_sum_path_cpp.Rd man/cities_coordinates.Rd man/cities_temperature.Rd man/color_continuous.Rd man/color_discrete.Rd man/cost_matrix_diagonal_cpp.Rd man/cost_matrix_diagonal_weighted_cpp.Rd man/cost_matrix_orthogonal_cpp.Rd man/cost_path_cpp.Rd man/cost_path_diagonal_bandwidth_cpp.Rd man/cost_path_diagonal_cpp.Rd man/cost_path_orthogonal_bandwidth_cpp.Rd man/cost_path_orthogonal_cpp.Rd man/cost_path_slotting_cpp.Rd man/cost_path_sum_cpp.Rd man/cost_path_trim_cpp.Rd man/covid_counties.Rd man/covid_prevalence.Rd man/distance.Rd man/distance_bray_curtis_cpp.Rd man/distance_canberra_cpp.Rd man/distance_chebyshev_cpp.Rd man/distance_chi_cpp.Rd man/distance_cosine_cpp.Rd man/distance_euclidean_cpp.Rd man/distance_hamming_cpp.Rd man/distance_hellinger_cpp.Rd man/distance_jaccard_cpp.Rd man/distance_ls_cpp.Rd man/distance_manhattan_cpp.Rd man/distance_matrix.Rd man/distance_matrix_cpp.Rd man/distance_russelrao_cpp.Rd man/distance_sorensen_cpp.Rd man/distances.Rd man/distantia-package.Rd man/distantia.Rd man/distantia_aggregate.Rd man/distantia_boxplot.Rd man/distantia_cluster_hclust.Rd man/distantia_cluster_kmeans.Rd man/distantia_dtw.Rd man/distantia_dtw_plot.Rd man/distantia_ls.Rd man/distantia_matrix.Rd man/distantia_model_frame.Rd man/distantia_spatial.Rd man/distantia_stats.Rd man/distantia_time_delay.Rd man/eemian_coordinates.Rd man/eemian_pollen.Rd man/f_binary.Rd man/f_clr.Rd man/f_detrend_difference.Rd man/f_detrend_linear.Rd man/f_detrend_poly.Rd man/f_hellinger.Rd man/f_list.Rd man/f_log.Rd man/f_percent.Rd man/f_proportion.Rd man/f_proportion_sqrt.Rd man/f_rescale_global.Rd man/f_rescale_local.Rd man/f_scale_global.Rd man/f_scale_local.Rd man/f_trend_linear.Rd man/f_trend_poly.Rd man/fagus_coordinates.Rd man/fagus_dynamics.Rd man/honeycomb_climate.Rd man/honeycomb_polygons.Rd man/importance_dtw_cpp.Rd man/importance_dtw_legacy_cpp.Rd man/importance_ls_cpp.Rd man/momentum.Rd man/momentum_aggregate.Rd man/momentum_boxplot.Rd man/momentum_dtw.Rd man/momentum_ls.Rd man/momentum_model_frame.Rd man/momentum_spatial.Rd man/momentum_stats.Rd man/momentum_to_wide.Rd man/permute_free_by_row_cpp.Rd man/permute_free_cpp.Rd man/permute_restricted_by_row_cpp.Rd man/permute_restricted_cpp.Rd man/psi_auto_distance.Rd man/psi_auto_sum.Rd man/psi_cost_matrix.Rd man/psi_cost_path.Rd man/psi_cost_path_sum.Rd man/psi_distance_lock_step.Rd man/psi_distance_matrix.Rd man/psi_dtw_cpp.Rd man/psi_equation.Rd man/psi_equation_cpp.Rd man/psi_ls_cpp.Rd man/psi_null_dtw_cpp.Rd man/psi_null_ls_cpp.Rd man/subset_matrix_by_rows_cpp.Rd man/tsl_aggregate.Rd man/tsl_burst.Rd man/tsl_colnames_clean.Rd man/tsl_colnames_get.Rd man/tsl_colnames_prefix.Rd man/tsl_colnames_set.Rd man/tsl_colnames_suffix.Rd man/tsl_count_NA.Rd man/tsl_diagnose.Rd man/tsl_handle_NA.Rd man/tsl_initialize.Rd man/tsl_join.Rd man/tsl_names_clean.Rd man/tsl_names_get.Rd man/tsl_names_set.Rd man/tsl_names_test.Rd man/tsl_ncol.Rd man/tsl_nrow.Rd man/tsl_plot.Rd man/tsl_repair.Rd man/tsl_resample.Rd man/tsl_simulate.Rd man/tsl_smooth.Rd man/tsl_stats.Rd man/tsl_subset.Rd man/tsl_time.Rd man/tsl_to_df.Rd man/tsl_transform.Rd man/utils_as_time.Rd man/utils_block_size.Rd man/utils_boxplot_common.Rd man/utils_check_args_distantia.Rd man/utils_check_args_matrix.Rd man/utils_check_args_momentum.Rd man/utils_check_args_path.Rd man/utils_check_args_tsl.Rd man/utils_check_args_zoo.Rd man/utils_check_distance_args.Rd man/utils_check_list_class.Rd man/utils_clean_names.Rd man/utils_cluster_hclust_optimizer.Rd man/utils_cluster_kmeans_optimizer.Rd man/utils_cluster_silhouette.Rd man/utils_coerce_time_class.Rd man/utils_color_breaks.Rd man/utils_digits.Rd man/utils_distantia_df_split.Rd man/utils_drop_geometry.Rd man/utils_global_scaling_params.Rd man/utils_is_time.Rd man/utils_line_color.Rd man/utils_line_guide.Rd man/utils_matrix_guide.Rd man/utils_matrix_plot.Rd man/utils_new_time.Rd man/utils_optimize_loess.Rd man/utils_optimize_spline.Rd man/utils_prepare_df.Rd man/utils_prepare_matrix.Rd man/utils_prepare_matrix_list.Rd man/utils_prepare_time.Rd man/utils_prepare_vector_list.Rd man/utils_prepare_zoo_list.Rd man/utils_rescale_vector.Rd man/utils_time_keywords.Rd man/utils_time_keywords_dictionary.Rd man/utils_time_keywords_translate.Rd man/utils_time_units.Rd man/utils_tsl_pairs.Rd man/zoo_aggregate.Rd man/zoo_name_clean.Rd man/zoo_name_get.Rd man/zoo_name_set.Rd man/zoo_permute.Rd man/zoo_plot.Rd man/zoo_resample.Rd man/zoo_simulate.Rd man/zoo_smooth_exponential.Rd man/zoo_smooth_window.Rd man/zoo_time.Rd man/zoo_to_tsl.Rd man/zoo_vector_to_matrix.Rd tests/spelling.R tests/testthat.R tests/testthat/test-distance.R tests/testthat/test-distance_matrix.R tests/testthat/test-distantia.R tests/testthat/test-distantia_cluster_hclust.R tests/testthat/test-distantia_cluster_kmeans.R tests/testthat/test-distantia_model_frame.R tests/testthat/test-distantia_spatial.R tests/testthat/test-distantia_time_shift.R tests/testthat/test-momentum.R tests/testthat/test-psi_equation.R tests/testthat/test-tsl_aggregate.R tests/testthat/test-tsl_burst.R tests/testthat/test-tsl_colnames.R tests/testthat/test-tsl_count_NA.R tests/testthat/test-tsl_diagnose.R tests/testthat/test-tsl_handle_NA.R tests/testthat/test-tsl_initialize.R tests/testthat/test-tsl_join.R tests/testthat/test-tsl_names.R tests/testthat/test-tsl_ncol.R tests/testthat/test-tsl_repair.R tests/testthat/test-tsl_resample.R tests/testthat/test-tsl_smooth.R tests/testthat/test-tsl_stats.R tests/testthat/test-tsl_subset.R tests/testthat/test-tsl_time.R tests/testthat/test-tsl_to_df.R tests/testthat/test-tsl_transform.R tests/testthat/test-utils_as_time.R tests/testthat/test-utils_clean_names.R tests/testthat/test-utils_cluster.R tests/testthat/test-utils_coerce_time_class.R tests/testthat/test-utils_digits.R tests/testthat/test-utils_distantia_df_split.R tests/testthat/test-utils_is_time.R tests/testthat/test-utils_new_time.R tests/testthat/test-utils_optimize_loess.R tests/testthat/test-utils_optimize_spline.R tests/testthat/test-utils_prepare_zoo_list.R tests/testthat/test-utils_rescale_vector.R tests/testthat/test-utils_time_keywords.R tests/testthat/test-utils_time_keywords_dictionary.R tests/testthat/test-utils_time_keywords_translate.R tests/testthat/test-utils_time_units.R tests/testthat/test-zoo_aggregate.R tests/testthat/test-zoo_names.R tests/testthat/test-zoo_permute.R tests/testthat/test-zoo_resample.R tests/testthat/test-zoo_simulate.R tests/testthat/test-zoo_smooth.R tests/testthat/test-zoo_time.R tests/testthat/test-zoo_to_tsl.R tests/testthat/test-zoo_vector_to_matrix.R vignettes/articles/distantia_in_the_wild.Rmd vignettes/articles/dtw_applications.Rmd vignettes/articles/dynamic_time_warping_and_lock_step.Rmd vignettes/articles/mapping_dissimilarity.Rmd vignettes/articles/time_series_lists.Rmd