.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
DLMtool.Rproj
LICENSE.md
NAMESPACE
NEWS.md
R/DLMtool-package.R
R/MPs_Input.R
R/MPs_Mixed.R
R/MPs_Output.R
R/MPs_SupportingFunctions.R
R/Misc.R
R/RcppExports.R
R/aaImportFrom.R
README.Rmd
README.md
_pkgdown.yml
build_tools/build_test.R
build_tools/readme.R
build_tools/write_pkgdown.yml.r
cran-comments.md
docs/404.html
docs/CNAME
docs/LICENSE.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/AvC-1.png
docs/reference/AvC.html
docs/reference/AvC_MLL-1.png
docs/reference/AvC_MLL.html
docs/reference/BK.html
docs/reference/CC-1.png
docs/reference/CC.html
docs/reference/CC1-1.png
docs/reference/CC1-2.png
docs/reference/CC1-3.png
docs/reference/CC1-4.png
docs/reference/CC1-5.png
docs/reference/CC1-6.png
docs/reference/CC1.html
docs/reference/CompSRA.html
docs/reference/CompSRA_.html
docs/reference/DBSRA-1.png
docs/reference/DBSRA-2.png
docs/reference/DBSRA-3.png
docs/reference/DBSRA.html
docs/reference/DBSRA_.html
docs/reference/DBSRAopt.html
docs/reference/DCAC-1.png
docs/reference/DCAC-2.png
docs/reference/DCAC-3.png
docs/reference/DCAC-4.png
docs/reference/DCAC-5.png
docs/reference/DCAC-6.png
docs/reference/DCAC.html
docs/reference/DCAC_.html
docs/reference/DD-1.png
docs/reference/DD-2.png
docs/reference/DD.html
docs/reference/DD_.html
docs/reference/DD_R.html
docs/reference/DDe-1.png
docs/reference/DDe-2.png
docs/reference/DDe-3.png
docs/reference/DDe.html
docs/reference/DTe40-1.png
docs/reference/DTe40.html
docs/reference/DynF-1.png
docs/reference/DynF.html
docs/reference/EtargetLopt-1.png
docs/reference/EtargetLopt.html
docs/reference/Fadapt-1.png
docs/reference/Fadapt.html
docs/reference/Fdem-1.png
docs/reference/Fdem-2.png
docs/reference/Fdem-3.png
docs/reference/Fdem.html
docs/reference/Fdem_.html
docs/reference/FilterSmooth.html
docs/reference/Fratio-1.png
docs/reference/Fratio-2.png
docs/reference/Fratio-3.png
docs/reference/Fratio-4.png
docs/reference/Fratio.html
docs/reference/Fratio_.html
docs/reference/GB_CC-1.png
docs/reference/GB_CC.html
docs/reference/GB_slope-1.png
docs/reference/GB_slope.html
docs/reference/GB_target-1.png
docs/reference/GB_target.html
docs/reference/Gcontrol-1.png
docs/reference/Gcontrol.html
docs/reference/ICI-1.png
docs/reference/ICI-2.png
docs/reference/ICI.html
docs/reference/IT5-1.png
docs/reference/IT5-2.png
docs/reference/IT5.html
docs/reference/ITM-1.png
docs/reference/ITM.html
docs/reference/IT_.html
docs/reference/ITe5-1.png
docs/reference/ITe5-2.png
docs/reference/ITe5.html
docs/reference/Iratio-1.png
docs/reference/Iratio.html
docs/reference/Islope1-1.png
docs/reference/Islope1-2.png
docs/reference/Islope1-3.png
docs/reference/Islope1-4.png
docs/reference/Islope1.html
docs/reference/Islope_.html
docs/reference/Itarget1-1.png
docs/reference/Itarget1-2.png
docs/reference/Itarget1-3.png
docs/reference/Itarget1-4.png
docs/reference/Itarget1.html
docs/reference/Itarget1_MPA-1.png
docs/reference/Itarget1_MPA.html
docs/reference/ItargetE1-1.png
docs/reference/ItargetE1-2.png
docs/reference/ItargetE1-3.png
docs/reference/ItargetE1.html
docs/reference/Itarget_.html
docs/reference/Itargeteff_.html
docs/reference/LBSPR.html
docs/reference/LBSPR_.html
docs/reference/Lratio_BHI-1.png
docs/reference/Lratio_BHI-2.png
docs/reference/Lratio_BHI-3.png
docs/reference/Lratio_BHI.html
docs/reference/LstepCC1-1.png
docs/reference/LstepCC1-2.png
docs/reference/LstepCC1-3.png
docs/reference/LstepCC1-4.png
docs/reference/LstepCC1.html
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docs/reference/LstepCE1.html
docs/reference/Ltarget1-1.png
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docs/reference/Ltarget1-5.png
docs/reference/Ltarget1.html
docs/reference/LtargetE1-1.png
docs/reference/LtargetE1-2.png
docs/reference/LtargetE1.html
docs/reference/MCD-1.png
docs/reference/MCD-2.png
docs/reference/MCD.html
docs/reference/MPurl.html
docs/reference/MRreal-1.png
docs/reference/MRreal.html
docs/reference/Rcontrol-1.png
docs/reference/Rcontrol-2.png
docs/reference/Rcontrol.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/Rplot004.png
docs/reference/Rplot005.png
docs/reference/Rplot006.png
docs/reference/SBT1-1.png
docs/reference/SBT1-2.png
docs/reference/SBT1.html
docs/reference/SPMSY-1.png
docs/reference/SPMSY.html
docs/reference/SPSRA-1.png
docs/reference/SPSRA.html
docs/reference/SPSRA_.html
docs/reference/SPmod-1.png
docs/reference/SPmod.html
docs/reference/SPslope-1.png
docs/reference/SPslope.html
docs/reference/TACfilter.html
docs/reference/YPR-1.png
docs/reference/YPR-2.png
docs/reference/YPR-3.png
docs/reference/YPR.html
docs/reference/YPR_.html
docs/reference/curE-1.png
docs/reference/curE-2.png
docs/reference/curE.html
docs/reference/demographic2.html
docs/reference/getr.html
docs/reference/hello.html
docs/reference/iVB.html
docs/reference/index.html
docs/reference/makeMeanMP.html
docs/reference/matlenlim-1.png
docs/reference/matlenlim-2.png
docs/reference/matlenlim-3.png
docs/reference/matlenlim-4.png
docs/reference/matlenlim.html
docs/reference/sample_steepness2.html
man-roxygen/MPtemplate.R
man-roxygen/MPuses.R
man-roxygen/userguide_link.R
man/AvC.Rd
man/AvC_MLL.Rd
man/BK.Rd
man/CC.Rd
man/CC1.Rd
man/CompSRA.Rd
man/CompSRA_.Rd
man/DBSRA.Rd
man/DBSRA_.Rd
man/DBSRAopt.Rd
man/DCAC.Rd
man/DCAC_.Rd
man/DD.Rd
man/DD_.Rd
man/DD_R.Rd
man/DDe.Rd
man/DLMtool-package.Rd
man/DTe40.Rd
man/DynF.Rd
man/EtargetLopt.Rd
man/Fadapt.Rd
man/Fdem.Rd
man/Fdem_.Rd
man/FilterSmooth.Rd
man/Fratio.Rd
man/Fratio_.Rd
man/GB_CC.Rd
man/GB_slope.Rd
man/GB_target.Rd
man/Gcontrol.Rd
man/ICI.Rd
man/IT5.Rd
man/ITM.Rd
man/IT_.Rd
man/ITe5.Rd
man/Iratio.Rd
man/Islope1.Rd
man/Islope_.Rd
man/Itarget1.Rd
man/Itarget1_MPA.Rd
man/ItargetE1.Rd
man/Itarget_.Rd
man/Itargeteff_.Rd
man/LBSPR.Rd
man/LBSPR_.Rd
man/Lratio_BHI.Rd
man/LstepCC1.Rd
man/LstepCE1.Rd
man/Ltarget1.Rd
man/LtargetE1.Rd
man/MCD.Rd
man/MRreal.Rd
man/Rcontrol.Rd
man/SBT1.Rd
man/SPMSY.Rd
man/SPSRA.Rd
man/SPSRA_.Rd
man/SPmod.Rd
man/SPslope.Rd
man/YPR.Rd
man/YPR_.Rd
man/curE.Rd
man/demographic2.Rd
man/figures/logo.png
man/getr.Rd
man/iVB.Rd
man/matlenlim.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/TMB/DLMtool_TMBExports.cpp
src/TMB/LBSPR.hpp
src/TMB/compile.R
src/bhnoneq_Rcpp.cpp
tests/manual/test-Input-MPs.R