API for BoevaLab/CHIPIN
ChIP-seq Intersample Normalization
| Global functions | |
|---|---|
| CHIPIN_normalize | Man page Source code |
| build_clusters_expression | Source code |
| computeStats | Source code |
| compute_matrixOne | Source code |
| compute_stats_AreaUnderCurves | Source code |
| correctbigwigscore | Source code |
| create_exons | Source code |
| fill_statsAfter | Source code |
| fill_statsAfter_1profiles | Source code |
| fill_statsAfter_2profiles | Source code |
| fill_statsAfter_3profiles | Source code |
| fill_statsAfter_4profiles | Source code |
| fill_statsAfter_5profiles | Source code |
| fill_statsBefore | Source code |
| find_gene_not_moving | Source code |
| getDatabw_woRemoveNoise | Source code |
| get_RPKM | Source code |
| get_readCounts | Source code |
| get_readCountsfromTPM | Source code |
| linear_normalization | Source code |
| plot_after_linear | Source code |
| plot_after_quantile | Source code |
| plot_before_afternorm_2profiles | Source code |
| plot_before_afternorm_3profiles | Source code |
| plot_before_afternorm_4profiles | Source code |
| plot_before_afternorm_5profiles | Source code |
| plot_before_afternorm_several | Source code |
| plot_before_quantile | Source code |
| plot_expression | Man page Source code |
| plot_ggplot_2curves | Source code |
| plot_ggplot_3curves | Source code |
| plot_ggplot_4curves | Source code |
| plot_ggplot_fivecurves | Source code |
| plot_ggplot_threecurves | Source code |
| plot_ggplot_threecurves_expression | Source code |
| prepareRegionToPlot_strandInDataP | Source code |
| profiles_gene_expression | Source code |
| quantile_norm | Source code |
