Man pages for BuerkiLabTeam/G2PMineR
Using a Literature Review Approach to Rapidly Link Genome to Phenome to Predict Adaptive Responses of Organisms to Changing Landscapes
| AbstractsClusterMakeR | Make Preliminary Network for QC |
| AbstractsGetteR | Gets Abstracts Frm PubMed IDs |
| AbstractsProportionCalculator | Calculates Proportion of Abstracts from which Results Were... |
| AlphaNumericalizeR | Removes Non-Alphanumerical Characters From Abstracts |
| AnimalGeneSynonymyKey | Key Associating Non-Overlapping Synonyms to Accepted Animals... |
| AnimalSpp | Animal Species Library |
| AnimalSwissGenesCombo | SwissProt Gene Library for Animals |
| AnimalTerms | Curated and Expanded Glossary of Animal Terms |
| AroundWordsSearcheR | N-gram abstract word search function |
| CleanPhenotypesLibrary | Cleans Phenotypes Library |
| CommonWordsRemoveR | Checks If Gene Matches Are English Words |
| ConsensusInferreR | Explore Inter-Dataset Intersectionality |
| CoOcBringeR | Gets Abstracts IDs From Results Data Using Search Term |
| CurateTaxonomy | Curates Taxonomy By Checking For Synonymy And Publication... |
| CustomLookeR | Extracts Custom Words From Abstracts |
| EasyG2PMineR | Easy G2PMineR Analysis Function |
| FungiGeneSynonymyKey | Key Associating Non-Overlapping Synonyms to Accepted Fungi... |
| FungiSpp | Fungi Species Library |
| FungiSwissGenesCombo | SwissProt Gene Library for Fungi |
| FungiTerms | Curated and Expanded Glossary of Fungi Terms |
| GeneFamiliesAssociatoR | Preprocesses genes (OPTIONAL) |
| GeneFrequencySifteR | Siftes Genes by Gene Frequency |
| GeneNamesGroupeR | Creates Artificial Gene Broups Based On Non-Numerical Names |
| GenesLookeR | Mines Abstract for Gene Names |
| GeneSynonymyKey | Key Associating Non-Overlapping Synonyms to Accepted Gene... |
| HTMLElementRemoveR | RemovesHTML elements |
| InternalPairwiseDistanceInferreR | Turn Distance Matrix into Longform Table |
| LookeRBringeR | Gets Abstracts IDs From Results Data Using Search |
| MakeAbsPhenLongform | Makes AbstractsSpp Longform |
| MakeAbstractsSppLongform | Makes AbstractsSpp Longform |
| MakeGenesOutLongform | Makes GenesOut Longform |
| MatchesBarPlotteR | Makes Matches Barplot |
| MembershipInvestigatoR | Checks If Gene Matches Are English Words |
| MoBotTerms | Curated and Expanded Mobot Glossary of Plant Terms |
| PairwiseDistanceInferreR | Finds weighted pairwise distances between two levels using... |
| PhenotypeLookeR | Extracts Phenotypes From Abstracts |
| SpeciesAbbreviatoR | Gets Abstracts IDs From Results Data Using Search |
| SpeciesLookeR | Checks If Species is in String |
| SpeciesPrepareR | Checks If Species is in String |
| SwissGenesCombo | SwissProt Gene Library |
| SynonymReplaceR | Replaces Gene Synonyms With Accepted Nomenclature |
| TaxoGenoPhenoIntegratoR | Integrate Matches For Taxonomy, Genes, and Phenotypes... |
| TopN_PickeR | Picks n Most Similar Pairs |
| TopN_PickeR_Internal | Picks n Most Similar Pairs |
| TracheophytaSpp | Trachephyta Species Libray |
| UtilityGradeR | Assigns A Grade To Gene Matches Based On Utility |
| VignetteAbstractsStrings | Abstracts Strings for Vignette |
| VignetteIDs | IDs for Vignette |
| Webster | Webster's Dictinary Words |
| WhatVersion | Prints Internal Version Name |
