API for BushmanLab/ltrparser
LTR Parser
| Global functions | |
|---|---|
| adjust_candidates | Source code |
| create_display_seq | Source code |
| extract_initial_soft_clip | Source code |
| extract_match_length | Source code |
| filter_candidates | Source code |
| get_closest_ltr_name | Source code |
| get_linker_match_string | Source code |
| get_unique_ltrs | Source code |
| identify_candidates_from_bowtie | Source code |
| identify_candidates_from_raw_reads | Source code |
| name_candidates | Source code |
| parse_bowtie_results | Source code |
| parse_ltrs | Source code |
| preliminary_candidates | Source code |
| read_config_file | Source code |
| recover_seqs | Source code |
| segment_seqs | Source code |
| summarize_candidates | Source code |
| summarize_seqs | Source code |
| update_candidates | Source code |
