Man pages for C3BI-pasteur-fr/TemporaFork
Pathway-based Trajectory Inference for Time-series Single Cell RNA-Seq Data
| BuildTrajectory | Build mutual information-based network |
| CalculatePWProfiles | Calculate pathway enrichment profile |
| CreateTemporaObject | Create new Tempora object from a processed gene expression... |
| getExpr | Get gene expression matrix from input data object |
| getMD | Get metadata from input data object |
| IdentifyCellTypes | Calculate pathway enrichment profile |
| IdentifyVaryingPWs | Calculate temporally changing pathways |
| IdentifyVaryingPWsParallel | Calculate temporally changing pathways (parallel version) |
| ImportSeuratObject | Import data from a Seurat object |
| PlotTrajectory | Visualize the trajectory |
| PlotVaryingPWs | Plot temporally changing pathways |
| Tempora-class | Define a class of Tempora object |
