Files in CBIIT-CGBB/gcMECM
Graph Based Clustering of mutual exclusivity of cancer mutation
DESCRIPTION
NAMESPACE
R/combine_test.R
R/dist2cluster.R
R/dist2graph.R
R/dist2tsne.R
R/do_filter.R
R/l4xy.R
R/p2cluster.R
R/p2dist.R
R/pathway_alignment.R
R/pathway_map.R
R/plot_me.R
R/plot_network.R
README.md
data/cancer_census_gene_tie1_2018.tsv
data/cancer_census_gene_tie2_2018.tsv
data/cli_BRCA.txt
data/glm_BRCA_sum.RData
data/glm_BRCA_sum.txt.gz
data/mutect_BRCA_matrix.txt.gz
data/pathway_name_hs.txt
data/pathway_relation_hs.txt
examples/02p2cluster.R
examples/03_1cluster_map.png
examples/03_2cluster_map.png
examples/03cluster_map.R
examples/04_1plot_ME.R
examples/04_1plot_ME.png
examples/04_2plot_ME.R
examples/04_2plot_ME.png
examples/05kegg_map.png
examples/05kegg_network.png
examples/05kegg_pathway.R
man/combine_test.Rd
man/dist2cluster.Rd
man/dist2graph.Rd
man/dist2tsne.Rd
man/do.scale.Rd
man/do_filter.Rd
man/l4xy.Rd
man/p2cluster.Rd
man/p2dist.Rd
man/pathway_alignment.Rd
man/pathway_map.Rd
man/plot_me.Rd
man/plot_network.Rd
vignettes/gcMECM_vignette.Rnw
