Man pages for CBIIT-CGBB/gcMECM
Graph Based Clustering of mutual exclusivity of cancer mutation
| combine_test | combine p values |
| dist2cluster | cluster with distance matrix by igraph clustering algorithms |
| dist2graph | create graph by distance matrix |
| dist2tsne | do tSNE with distance matrix |
| do_filter | remove rows by the genes |
| do.scale | local scale function |
| l4xy | map coordinates on the given circle |
| p2cluster | do cluster from data frame |
| p2dist | do distance matrix by p values |
| pathway_alignment | align mutual exclusivity mutation module and pathway network |
| pathway_map | map genes on pathway |
| plot_me | visulization of mutual exclusivity |
| plot_network | plot a nice network |
