Man pages for CCSBT/sbtr
sbtr
| calc.MSYstuff.R | MSY.stats <-... |
| dot-onAttach | Function to return version number |
| get_all_files | Load _lab.rep files into R |
| get_cov_est | Load covariance and estimates R |
| get_MSY_vals | Plot histograms of MSY values. |
| panel_cor | Panel correlations. |
| panel_hist | Panel histogram. |
| panel_smooth | Panel smooth. |
| plot_aerial_survey_fit_comparison | Plot fits to aerial surveys |
| plot_all_survey_fit | Plot fits to all surveys |
| plot_ASP | Plot ASP |
| plot_ASP_projection | Plot ASP projections |
| plot_Australian_age_fits | Plot of model fit to the observed Australian age-frequencies... |
| plot_Australian_age_fits_old | Plot of model fit to the observed Australian age-frequencies... |
| plot_compare_plus_groups | Plot plus groups. |
| plot_CPUE_fit_comparison | Plot and compare fits to CPUE |
| plot_harvest_rates | Boxplots harvest rates by age ranges |
| plot_Indonesian_age_fits | Plot of model fit to the observed Indonesian age-frequencies... |
| plot_Indonesian_selectivity | Plot Indonesian selectivity. |
| plot_Kobe | Plots U/Umsy vs B/Bmsy over time with confidence intervals. |
| plot_Kobe_TRO | Plots U/Umsy vs B/Bmsy over time with confidence intervals. |
| plot_length_fits_LL | Predicted length frequency for longline fishery 1 to the... |
| plot_length_resid_LL | Length-frequency residuals |
| plot_lev | Plot lev |
| plot_M_vector | Plot M. |
| plot_NLL_by_m | Plot the likelihoods by M1 values, using Paige Evesons code... |
| plot_NLL_by_M | Predicted length frequency for longline fishery 1 to the... |
| plot_NLL_by_mM | Plot the likelihoods by M1 values, using Paige Evesons code... |
| plot_NLL_by_steepness | Plots the likelihoods for different likelihood components. |
| plot_numbers_at_age | Plot numbers at age |
| plot_pen_by_M0 | now for M0 |
| plot_pen_by_M10 | now for M10 |
| plot_pen_by_steepness | Plot the likelihoods by steepness values, using Paige's code... |
| plot_recruitment | Plot of recruitment |
| plot_recruitment_and_ssb | Plot recruitment and SSB |
| plot_SR | Plot SR |
| plot_SSB | Plot spawning stock biomass. |
| plot_SSB_compare | SSB by year comparison |
| plot_tagging_fits | Plots the fits to the tagging data |
| plot_tagging_fits_pooled | Plots the fits to the pooled tagging data. |
| plot_tagging_fits_pooled_compare | Plots side by side fits to tagging data from two lab_rep... |
| plot_tagging_fits_same_age | Plots the fits to the tagging data |
| plot_tagging_fits_subsequent | Plots the fits to the tagging data for sbtmod22.tpl |
| plot_troll_survey_fit | Plot fits to troll surveys |
| plot_troll_survey_fit_comparison | Plot fits to troll surveys |
| table_likelihood | Table of the likelihood components for a specified set of... |
