CRI-iAtlas/iatlas-app
What the Package Does (One Line, Title Case)

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Search the CRI-iAtlas/iatlas-app package
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Functions
225
Source code
218
Man pages
5
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CRI-iAtlas/iatlas-app: What the Package Does (One Line, Title Case)
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API

API for CRI-iAtlas/iatlas-app
What the Package Does (One Line, Title Case)

Global functions
add_nonexistent_feature_nodes Source code
add_nonexistent_gene_nodes Source code
assert_df_has_columns Source code
assert_df_has_rows Source code
build_cnv_group_list Source code
build_co_survival_list Source code
build_coxph_df Source code
build_distribution_io_df Source code
build_ecn_gene_choice_list Source code
build_im_dt_tbl Source code
build_io_target_dt_tbl Source code
build_survival_df Source code
call_iatlas_module Source code
call_module_server Source code
cellimage_main_server Source code
cellimage_main_ui Source code
cellimage_network_server Source code
cellimage_network_ui Source code
cellimage_plot_server Source code
cellimage_plot_ui Source code
cellimage_server Source code
cellimage_ui Source code
change_survival_endpoint Source code
check_categorical_predictors Source code
classifySubtype Source code
clinical_outcomes_heatmap_server Source code
clinical_outcomes_heatmap_ui Source code
clinical_outcomes_server Source code
clinical_outcomes_survival_server Source code
clinical_outcomes_survival_ui Source code
clinical_outcomes_ui Source code
combine_colors Source code
combine_groups Source code
convert_value_between_columns Source code
convert_values Source code
copy_number_response_server Source code
copy_number_response_ui Source code
copy_number_server Source code
copy_number_ui Source code
create_barplot Source code
create_barplot_horizontal Source code
create_boxplot Source code
create_boxplot_from_summary_stats Source code
create_cellimage_json Source code
create_covariate_string Source code
create_filtered_nested_list_by_class Source code
create_forestplot_plotly Source code
create_heatmap Source code
create_heritability_df Man page Source code
create_histogram Source code
create_ici_options Source code
create_io_landscape_links Source code
create_kmplot Source code
create_mosaicplot Source code
create_nested_list_by_class Source code
create_numerical_covariate_string Source code
create_ph_df Source code
create_plot_onegroup Source code
create_plot_twogroup Source code
create_scatterplot Source code
create_snp_popup_tbl Source code
create_tm_slide_link Man page Source code
create_violinplot Source code
data_info_server Source code
data_info_ui Source code
data_table_server Source code
data_table_ui Source code
df_to_nested_list Source code
docspage_ui Source code
driver_associations_server Source code
driver_associations_ui Source code
exclude_treatment_data Source code
explorepage_ui Source code
extracellular_network_main_server Source code
extracellular_network_main_ui Source code
extracellular_network_server Source code
extracellular_network_ui Source code
filter_feature_tbl Man page Source code
fit_coxph Source code
format_feature_tbl Man page Source code
format_filtered_feature_tbl Man page Source code
format_gwas_df Source code
format_heritability_plot Source code
germline_gwas_server Source code
germline_gwas_ui Source code
germline_heritability_server Source code
germline_heritability_ui Source code
germline_rarevariants_server Source code
germline_rarevariants_ui Source code
germline_server Source code
germline_ui Source code
getVarColor Source code
get_available_survival_endpoint Source code
get_balance_class Source code
get_cellimage_edges Source code
get_cellimage_feature_nodes Source code
get_cellimage_features Source code
get_cellimage_gene_nodes Source code
get_cellimage_genes Source code
get_complete_df_by_columns Source code
get_cv_folds Source code
get_dataset_id Source code
get_dataset_label Source code
get_example_path Source code
get_feature_by_dataset Source code
get_gene_from_url Source code
get_group_colors Source code
get_group_labels Source code
get_hlines_pos Source code
get_html_path Source code
get_io_mosaic_df Source code
get_io_overview_table Source code
get_items_from_numeric_covariate_output Source code
get_javascript_path Source code
get_lines_pos Source code
get_markdown_path Source code
get_names_from_categorical_covariate_output Source code
get_plot_title Source code
get_plot_var_importance Source code
get_predictors_df Source code
get_scaled_data Source code
get_snp_links Source code
get_stat_test Source code
get_svg_path Source code
get_system_path_file Source code
get_table_cv_results Source code
get_test_title Source code
get_testing_results Source code
get_top_margin Source code
get_training_object Source code
get_tsv_path Source code
ici_clinical_outcomes_plot_server Source code
ici_clinical_outcomes_plot_ui Source code
ici_clinical_outcomes_server Source code
ici_clinical_outcomes_ui Source code
ici_distribution_server Source code
ici_distribution_ui Source code
ici_hazard_ratio_main_server Source code
ici_hazard_ratio_main_ui Source code
ici_hazard_ratio_server Source code
ici_hazard_ratio_ui Source code
ici_immune_features_server Source code
ici_immune_features_ui Source code
ici_immunomodulators_server Source code
ici_immunomodulators_ui Source code
ici_models_main_server Source code
ici_models_main_ui Source code
ici_models_server Source code
ici_models_train_server Source code
ici_models_train_ui Source code
ici_models_ui Source code
ici_neoantigen_classes_server Source code
ici_neoantigen_classes_ui Source code
ici_neoantigen_correlations_server Source code
ici_neoantigen_correlations_ui Source code
ici_neoantigen_frequency_server Source code
ici_neoantigen_frequency_ui Source code
ici_neoantigen_server Source code
ici_neoantigen_ui Source code
ici_overview_category_server Source code
ici_overview_category_ui Source code
ici_overview_datasets_server Source code
ici_overview_datasets_ui Source code
ici_overview_server Source code
ici_overview_ui Source code
immune_feature_correlations_server Source code
immune_feature_correlations_ui Source code
immune_feature_distributions_server Source code
immune_feature_distributions_ui Source code
immune_features_server Source code
immune_features_ui Source code
immune_subtype_classifier_server Source code
immune_subtype_classifier_ui Source code
immunomodulator_datatable_server Source code
immunomodulator_distributions_server Source code
immunomodulators_datatable_ui Source code
immunomodulators_distributions_ui Source code
immunomodulators_server Source code
immunomodulators_ui Source code
io_target_datatable_server Source code
io_target_datatable_ui Source code
io_target_distributions_server Source code
io_target_distributions_ui Source code
io_targets_server Source code
io_targets_ui Source code
load_io_data Source code
load_io_response Source code
log2foldchanges Source code
model_selection_server Source code
model_selection_ui Source code
module_ui Source code
normalize_dataset Source code
normalize_variable Source code
readNewDataTable Source code
run_elastic_net Source code
run_logistic_reg Source code
run_rf Source code
run_xgboost Source code
sc_bubbleplot_server Source code
sc_bubbleplot_ui Source code
sc_immune_features_distribution_server Source code
sc_immune_features_distribution_ui Source code
sc_immune_features_server Source code
sc_immune_features_ui Source code
sc_immunomodulators_server Source code
sc_immunomodulators_ui Source code
sc_umap_server Source code
sc_umap_ui Source code
til_map_datatable_server Source code
til_map_datatable_ui Source code
til_map_distributions_server Source code
til_map_distributions_ui Source code
til_map_server Source code
til_map_ui Source code
tumor_microenvironment_cell_proportions_server Source code
tumor_microenvironment_cell_proportions_ui Source code
tumor_microenvironment_server Source code
tumor_microenvironment_type_fractions_server Source code
tumor_microenvironment_type_fractions_ui Source code
tumor_microenvironment_ui Source code
CRI-iAtlas/iatlas-app documentation built on Feb. 7, 2025, 9:02 p.m.

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