Files in CRI-iAtlas/iatlas-data
iAtlas Data
.Rbuildignore
.Rprofile
.covrignore
.dockerignore
.gitattributes
.gitignore
.gitlab-ci.yml
DESCRIPTION
Dockerfile.build
NAMESPACE
R/build_all.R
R/build_copy_number_results_table.R
R/build_datasets_tables.R
R/build_datasets_to_tags_table.R
R/build_driver_results_table.R
R/build_features_tables.R
R/build_features_to_samples_table.R
R/build_gene_types_table.R
R/build_genes_tables.R
R/build_genes_to_samples_table.R
R/build_genes_to_types_table.R
R/build_helpers.R
R/build_iatlas_db.R
R/build_mutation_codes_table.R
R/build_mutation_types_table.R
R/build_mutations_table.R
R/build_nodes_tables.R
R/build_patients_table.R
R/build_pipeline.R
R/build_publications_table.R
R/build_publications_to_genes_table.R
R/build_samples_table.R
R/build_samples_to_mutations_table.R
R/build_samples_to_tags_table.R
R/build_slides_table.R
R/build_tags_tables.R
R/configure_feather_file_folder.R
R/connect_to_db.R
R/create_db.R
R/data_functions.R
R/database_functions.R
R/get_dupes.R
R/load_all_samples.R
R/load_config.R
R/resolve_df_dupes.R
R/result_cache.R
R/sql_schema.R
R/synapse_functions.R
README.md
SYNAPSE.md
config.yml
data_model/README.md
data_model/iAtlas_Database_Relationships.png
feather_files/README.md
iatlas-data.Rproj
init.R
install.R
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
scripts/create_db.sh
scripts/gitlab_build_db.sh
scripts/start_pg_admin.sh
sql/create_dev_db.sql
sql/create_enums.sql
sql/create_prod_db.sql
sql/create_test_db.sql
tests/config.yml
tests/scripts
tests/sql
tests/testthat.R
tests/testthat/create_test_data.R
tests/testthat/helper_database_env.R
tests/testthat/test_data_functions.R
tests/testthat/test_database_functions.R
tests/testthat/test_env.R
tests/testthat/test_resolve_df_dupes.R
tests/testthat/test_result_cache.R
tests/testthat/test_sql_schema.R
tests/testthat/test_zzz_build_iatlas_db.R
