Files in CSOgroup/CALDER
CALDER: a Hi-C non-linear hierarchical organization analysis tool
.DS_Store
.gitattributes
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/CALDER_hierarchy.R
R/CALDER_main.R
R/HRG_MLE_each_compartment_fun.R
R/HighResolution2Low.R
R/LikelihoodRatioTest_fun.R
R/RcppExports.R
R/bisecting_kmeans.R
R/call_domains.R
R/compartment_PCA.R
R/compartment_data_generation_fun.R
R/general_functions.R
R/generate_compartments_bed_fun.R
R/post_processing_nested_domains.R
R/prunning.R
R/zigzag_nested_domain.R
README.md
Read-and-delete-me
img/CALDER_methods.png
img/Hela_chr11_and_RWPE1_chr9_pq.png
img/IGV_results.png
inst/.DS_Store
inst/extdata/TxDb.Hsapiens.UCSC.hg19.knownGene.rds
inst/extdata/TxDb.Mmusculus.UCSC.mm9.knownGene.rds
inst/extdata/mat_chr22_10kb_ob.txt.gz
inst/extdata/mat_mm9_chr1_100kb_ob.txt.gz
man/.Rapp.history
man/CALDER-package.Rd
src/.DS_Store
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/matrix_multiplication_fun.cpp
src/zigzag_loglik_ancestors_v4.5.cpp
