Man pages for CYGUBICKO/satpred
Survival Analysis Trianing and PREDiction (satpred)
| brierProb | Generate probabilities for TDC brier score |
| coxph.satpred | Implemented packages |
| cverror.coxph | Cross-validation error |
| cverror.deepsurv | Cross-validation error |
| cverror.gbm | Cross-validation error |
| cverror.rfsrc | Cross-validation error |
| deepsurv.satpred | Implemented packages |
| dot-shatfunc2 | Helper function for the TDC brier score |
| gbm3basehaz.gbm | Compute survival curve and cumulative hazard from a gbm3... |
| gbm3Hazard | Compute predicted hazard for gbm3 |
| gbm3.satpred | Implemented packages |
| gbm3survfit.gbm | Compute survival curve and cumulative hazard from a gbm3... |
| gbm.satpred | Implemented packages |
| get_avesurv.coxph | Average survival for coxph |
| get_avesurv.deepsurv | Average survival |
| get_avesurv.gbm | Average survival |
| get_avesurv.glmnetsurv | Average survival for glmnetsurv |
| get_avesurv.rfsrc | Average survival |
| get_avesurv.satpred | Average survival |
| getbesTune | Get best tune |
| get_ibsTDC | Compute brier or integrated brier score for a TDC survival... |
| get_indivsurv.coxph | Individual survival |
| get_indivsurv.deepsurv | Individual survival |
| get_indivsurv.gbm | Individual survival |
| get_indivsurv.rfsrc | Individual survival |
| get_indivsurv.satpred | Individual survival |
| get_pvimp | Permutation variable importance |
| get_survconcord | Compute the concordance statistic for the pcoxtime model |
| get_tdcauc | Generate (TDC) AUC based on riskstAUC from risksetROC package |
| get_tdcfoldids | Create K-fold indices for TDC data |
| get_tdcroc | Generate AUC and ROC |
| get_varimp | Compute variable importance of various survival models object |
| modcv | Cross-validation |
| modfit.satpred | Model fitting |
| modtidy.rfsrc | Tidy model objects |
| modtune | Model tuning |
| one_ibsTDC | Helper function for the TDC brier score |
| one_tdcauc | Generate (TDC) AUC based on riskstAUC from risksetROC package |
| one_tdcroc | Generate (TDC) ROC and AUC |
| pkgsExport | Import and export various functions from various packages |
| plot.coxph.satpred | Cross-validation plots |
| plot.deepsurv.satpred | Cross-validation plots |
| plot.gbm.satpred | Cross-validation plots |
| plot.ibsTDC | Plot brier or integrated brier score estimates |
| plotpec | Plotting prediction error curves |
| plot.rfsrc.satpred | Cross-validation plots |
| plot.roctdc | Plot AUC and ROC supporting TDC |
| plot.satsurv | Plot survival and cumulative hazard curves |
| plot.Score | Prediction performance |
| plot.tdcauc | Plot AUC and survival curves supporting TDC using risksetROC... |
| plot.varimp | Generic method for plotting variable importance of various... |
| predictRisk.deepsurv | Extract predictions from gbm model |
| predictRisk.gbm.satpred | Extract predictions from gbm model |
| predictRisk.satpred | Extract predictions from satpred model |
| predict.satpred | Predictions |
| predictSurvProb.deepsurv | Predict survival probabilities at various time points |
| predictSurvProb.gbm.satpred | Predict survival probabilities at various time points |
| predictSurvProb.satpred | Predict survival probabilities at various time points |
| predtidy.rfsrc | Tidy prediction objects |
| pvimp.deepsurv | Permutation variable importance method for deepsurv |
| pvimp.default | Permutation variable importance method for default models |
| pvimp.gbm | Permutation variable importance method for gbm |
| pvimp.rfsrc | Permutation variable importance method for rfsrc |
| rcpp_hello_world | Simple function using Rcpp |
| resamplesTDC | Create resample indices or data frame for a TDC survival data |
| rfsrc.satpred | Implemented packages |
| satpred | Survival Analysis Trianing and PREDiction (satpred) |
| satpred-package | A short title line describing what the package does |
| satpredtheme | Set theme for satpred plots |
| survconcord.deepsurv | Compute the concordance statistic for the deepsurv model |
| survconcord.default | Compute the concordance statistic for the default model... |
| survconcord.gbm | Compute the concordance statistic for the pcoxtime model |
| survconcord.rfsrc | Compute the concordance statistic for the randomRoresrSRC... |
| varimp.deepsurv | Compute variable importance deepsurv |
| varimp.default | Compute variable importance for default models |
| varimp.gbm | Compute variable importance gbm |
| varimp.rfsrc | Compute variable importance random forest |
