CamaraLab/TDA-TCGA: An R package for identification of relevant genetic alterations in cancer using topological data analysis
TDAmut is a pipeline for identifying candidate driver mutations and genetic alterations in cancer from transcriptomic and genetic data. TDAmut constructs a network representation of the expression subspace using TDAMapper, implements controls for spurious correlations between gene expression and mutation, and assesses localization of genetic alterations using RayleighSelection.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Adam Alghalith [aut], Jake Gurevitch [aut] |
| Maintainer | Pablo G. Cámara <pcamara@pennmedicine.upenn.edu> |
| License | GNU General Public License v3.0 |
| Version | 0.0.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
