Files in CamaraLab/TDA-TCGA
An R package for identification of relevant genetic alterations in cancer using topological data analysis
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/compute_complexes.R
R/compute_gene_localization.R
R/create_TDAmut_object.R
R/filter_genes.R
R/objects.R
R/plot_mapper.R
README.md
TDA.TCGA.Rproj
TDAmut_Tutorial.Rmd
TDAmut_Tutorial_files/figure-gfm/mut_load-1.png
TDAmut_Tutorial_files/figure-gfm/mut_load-2.png
TDAmut_Tutorial_files/figure-gfm/plots-1.png
TDAmut_Tutorial_files/figure-gfm/plots-2.png
TDAmut_Tutorial_files/figure-gfm/plots-3.png
TDAmut_Tutorial_files/figure-gfm/plots-4.png
TDAmut_Tutorial_files/figure-html/mut_load-1.png
TDAmut_Tutorial_files/figure-html/mut_load-2.png
TDAmut_Tutorial_files/figure-html/plots-1.png
TDAmut_Tutorial_files/figure-html/plots-2.png
TDAmut_Tutorial_files/figure-html/plots-3.png
TDAmut_Tutorial_files/updated_images/text.txt
data/LGG_Full_TPM_matrix.csv
data/LGG_Muts.txt
data/LGG_NonSynMuts.txt
data/LGG_NonSynMuts_Binary.txt
data/LGG_SynMuts.txt
data/create_mut_table.R
man/TDAmut-class.Rd
man/compute_complexes.Rd
man/compute_gene_localization.Rd
man/create_TDAmut_object.Rd
man/filter_genes.Rd
man/plot_mapper.Rd
