Files in CharlesJB/anno
Download and clean references and prepare annotations
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/prepare_anno.R
README.md
anno.Rproj
inst/extdata/ERCC92.fa
inst/extdata/ERCC92.gtf
inst/extdata/tests/Bt.Ensembl108/Bt.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/Hs.Ensembl108.ERCC92/Hs.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/Hs.Ensembl108/Hs.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/Hs.Gencode42/Hs.Gencode42.raw_ref.fa.gz
inst/extdata/tests/Mm.Ensembl102/Mm.Ensembl102.raw_ref.fa.gz
inst/extdata/tests/Mm.Ensembl108/Mm.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/Mm.Gencode31/Mm.Gencode31.raw_ref.fa.gz
inst/extdata/tests/Mmu.Ensembl108/Mmu.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/Rn.Ensembl102/Rn.Ensembl102.raw_ref.fa.gz
inst/extdata/tests/Rn.Ensembl108/Rn.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/error/Mm.Ensembl10000.raw_ref.fa.gz
inst/extdata/tests/error/Mm.Ensembl10001.raw_ref.fa.gz
inst/extdata/tests/reference/Bt.Ensembl108.cleaned_ref.csv
inst/extdata/tests/reference/Bt.Ensembl108.cleaned_ref.fa.gz
inst/extdata/tests/reference/Bt.Ensembl108.no_alt_chr.csv
inst/extdata/tests/reference/Bt.Ensembl108.no_alt_chr.fa.gz
inst/extdata/tests/reference/Bt.Ensembl108.protein_coding.csv
inst/extdata/tests/reference/Bt.Ensembl108.protein_coding.fa.gz
inst/extdata/tests/reference/Bt.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/reference/Hs.Ensembl108.ERCC92.cleaned_ref.csv
inst/extdata/tests/reference/Hs.Ensembl108.ERCC92.cleaned_ref.fa.gz
inst/extdata/tests/reference/Hs.Ensembl108.ERCC92.no_alt_chr.csv
inst/extdata/tests/reference/Hs.Ensembl108.ERCC92.no_alt_chr.fa.gz
inst/extdata/tests/reference/Hs.Ensembl108.ERCC92.protein_coding.csv
inst/extdata/tests/reference/Hs.Ensembl108.ERCC92.protein_coding.fa.gz
inst/extdata/tests/reference/Hs.Ensembl108.ERCC92.raw_ref.fa.gz
inst/extdata/tests/reference/Hs.Ensembl108.cleaned_ref.csv
inst/extdata/tests/reference/Hs.Ensembl108.cleaned_ref.fa.gz
inst/extdata/tests/reference/Hs.Ensembl108.no_alt_chr.csv
inst/extdata/tests/reference/Hs.Ensembl108.no_alt_chr.fa.gz
inst/extdata/tests/reference/Hs.Ensembl108.protein_coding.csv
inst/extdata/tests/reference/Hs.Ensembl108.protein_coding.fa.gz
inst/extdata/tests/reference/Hs.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/reference/Hs.Gencode42.cleaned_ref.csv
inst/extdata/tests/reference/Hs.Gencode42.cleaned_ref.fa.gz
inst/extdata/tests/reference/Hs.Gencode42.no_alt_chr.csv
inst/extdata/tests/reference/Hs.Gencode42.no_alt_chr.fa.gz
inst/extdata/tests/reference/Hs.Gencode42.protein_coding.csv
inst/extdata/tests/reference/Hs.Gencode42.protein_coding.fa.gz
inst/extdata/tests/reference/Hs.Gencode42.raw_ref.fa.gz
inst/extdata/tests/reference/Mm.Ensembl102.cleaned_ref.csv
inst/extdata/tests/reference/Mm.Ensembl102.cleaned_ref.fa.gz
inst/extdata/tests/reference/Mm.Ensembl102.no_alt_chr.csv
inst/extdata/tests/reference/Mm.Ensembl102.no_alt_chr.fa.gz
inst/extdata/tests/reference/Mm.Ensembl102.protein_coding.csv
inst/extdata/tests/reference/Mm.Ensembl102.protein_coding.fa.gz
inst/extdata/tests/reference/Mm.Ensembl102.raw_ref.fa.gz
inst/extdata/tests/reference/Mm.Ensembl108.cleaned_ref.csv
inst/extdata/tests/reference/Mm.Ensembl108.cleaned_ref.fa.gz
inst/extdata/tests/reference/Mm.Ensembl108.no_alt_chr.csv
inst/extdata/tests/reference/Mm.Ensembl108.no_alt_chr.fa.gz
inst/extdata/tests/reference/Mm.Ensembl108.protein_coding.csv
inst/extdata/tests/reference/Mm.Ensembl108.protein_coding.fa.gz
inst/extdata/tests/reference/Mm.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/reference/Mm.Gencode31.cleaned_ref.csv
inst/extdata/tests/reference/Mm.Gencode31.cleaned_ref.fa.gz
inst/extdata/tests/reference/Mm.Gencode31.no_alt_chr.csv
inst/extdata/tests/reference/Mm.Gencode31.no_alt_chr.fa.gz
inst/extdata/tests/reference/Mm.Gencode31.protein_coding.csv
inst/extdata/tests/reference/Mm.Gencode31.protein_coding.fa.gz
inst/extdata/tests/reference/Mm.Gencode31.raw_ref.fa.gz
inst/extdata/tests/reference/Mmu.Ensembl108.cleaned_ref.csv
inst/extdata/tests/reference/Mmu.Ensembl108.cleaned_ref.fa.gz
inst/extdata/tests/reference/Mmu.Ensembl108.no_alt_chr.csv
inst/extdata/tests/reference/Mmu.Ensembl108.no_alt_chr.fa.gz
inst/extdata/tests/reference/Mmu.Ensembl108.protein_coding.csv
inst/extdata/tests/reference/Mmu.Ensembl108.protein_coding.fa.gz
inst/extdata/tests/reference/Mmu.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/reference/Rn.Ensembl102.cleaned_ref.csv
inst/extdata/tests/reference/Rn.Ensembl102.cleaned_ref.fa.gz
inst/extdata/tests/reference/Rn.Ensembl102.no_alt_chr.csv
inst/extdata/tests/reference/Rn.Ensembl102.no_alt_chr.fa.gz
inst/extdata/tests/reference/Rn.Ensembl102.protein_coding.csv
inst/extdata/tests/reference/Rn.Ensembl102.protein_coding.fa.gz
inst/extdata/tests/reference/Rn.Ensembl102.raw_ref.fa.gz
inst/extdata/tests/reference/Rn.Ensembl108.cleaned_ref.csv
inst/extdata/tests/reference/Rn.Ensembl108.cleaned_ref.fa.gz
inst/extdata/tests/reference/Rn.Ensembl108.no_alt_chr.csv
inst/extdata/tests/reference/Rn.Ensembl108.no_alt_chr.fa.gz
inst/extdata/tests/reference/Rn.Ensembl108.protein_coding.csv
inst/extdata/tests/reference/Rn.Ensembl108.protein_coding.fa.gz
inst/extdata/tests/reference/Rn.Ensembl108.raw_ref.fa.gz
inst/extdata/tests/scripts/clean_names.sh
inst/extdata/tests/scripts/no_alt.sh
inst/extdata/tests/scripts/no_alt_full.sh
inst/extdata/tests/scripts/prepare_minimal.sh
inst/extdata/tests/scripts/protein_coding.sh
inst/extdata/tests/scripts/todo
man/prepare_anno.Rd
tests/testthat.R
tests/testthat/test-prepare_anno.R
vignettes/.gitignore
vignettes/use_prepare_anno.Rmd
