API for ChenMengjie/Citrus
Single cell RNA sequencing analysis tools
| Global functions | |
|---|---|
| .identifiablityAdjust | Source code |
| .reorderAmat | Source code |
| .reorderAvec | Source code |
| .reorderClusterByMu | Source code |
| AdjacencyMatrix | Source code |
| CAFE | Source code |
| CitrusUserGuide | Source code |
| CountSparsity | Source code |
| Cquantile | Source code |
| DirichletIBPModel | Source code |
| DirichletIBPModelZero | Source code |
| DirichletIBPPLSModel | Source code |
| DirichletIBPPLSModelZero | Source code |
| DirichletSpikeModel | Source code |
| DirichletSpikeModelZero | Source code |
| DirichletSpikePLSModel | Source code |
| DirichletSpikePLSModelZero | Source code |
| EM_for_one_chunk | Source code |
| EvaluateSimilarity | Source code |
| FactorAnalysisWithNoBiologicalVariation | Source code |
| FactorAnalysisWithSpikein | Source code |
| IBPfactormodel | Source code |
| InNotIn | Source code |
| LassoByGenlasso | Source code |
| MergeCluster | Source code |
| MixtureFactorModelWithoutSpikein | Source code |
| MutualInformation | Source code |
| NaivePCA | Source code |
| PLSIBPfactormodel | Source code |
| PLSMixtureFactorModelSpikein | Source code |
| PLSfactorEM | Source code |
| PLSfactorEMchunk | Source code |
| PLSfactorEMpenalty | Source code |
| PLSfactorEMpenaltyCVonefold | Source code |
| PLSfactorEMpenaltyGivenPen | Source code |
| PLSfactorEMpenaltyNfoldCV | Source code |
| PLSfactorEMpenaltyTrain | Source code |
| PLSinitilization | Source code |
| PLSinitilizationIBP | Source code |
| QuantileSummary | Source code |
| RandIndex | Source code |
| RandIndexAdjusted | Source code |
| SensitivitySpecificity | Source code |
| Similarity | Source code |
| callKmeans | Source code |
| callLasso | Source code |
| callpois | Source code |
| clusterSummary | Source code |
| colmean | Source code |
| dmvnrmArma | Source code |
| dmvnrmRowArma | Source code |
| factorEM | Source code |
| fastInverse | Source code |
| floss | Source code |
| harmonic | Source code |
| heatmap.3 | Source code |
| heatmap_block | Source code |
| initialize_lambda | Source code |
| initilizationIBP | Source code |
| logratio | Source code |
| mvrnormArma | Source code |
| plot.CitrusReport | Source code |
| plotBlock | Source code |
| reorderMatF | Source code |
| riwishart | Source code |
| sampleFromMND | Source code |
| scPLS | Man page Source code |
| subsetMat | Source code |
