ChristopherBarrington/seuratvis
Visualise data in a Seurat object

Package index
Search the ChristopherBarrington/seuratvis package
Vignettes
Functions
114
Source code
43
Man pages
5
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ChristopherBarrington/seuratvis: Visualise data in a Seurat object
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API

API for ChristopherBarrington/seuratvis
Visualise data in a Seurat object

Global functions
ace_editor.server Source code
ace_editor.ui Source code
add_feature_module_score.server Source code
add_feature_module_score.ui Source code
add_feature_module_tab.server Source code
available_seurats.tab Source code
available_seurats_tab.server Source code
boxplot.plot Source code
boxplot_plot.add_common Source code
boxplot_plot.n_features.server Source code
cell_filtering_tab.server Source code
cluster_classification.tab Source code
cluster_filtering_tab.server Source code
cluster_picker.server Source code
cluster_picker.ui Source code
colour_picker.server Source code
colour_picker.ui Source code
component_picker.ui Source code
component_picker_slider.ui Source code
components_picker_range.ui Source code
components_selector.server Source code
contact_links.list Source code
contact_links.menu Source code
dataset_filtering.server Source code
dataset_info_text_box.defaults Man page Source code
dataset_info_text_box.n_cells Source code
dataset_info_text_box.n_filtered_cells Source code
dataset_info_text_box.n_filtered_umi Source code
dataset_info_text_box.n_umi Source code
dataset_info_text_box.n_umi_per_cell Source code
dataset_info_text_box.n_umi_per_filtered_cell Source code
dataset_info_text_box.project_name Source code
dataset_info_text_box.ui Source code
density.plot Source code
density_plot.add_common Source code
density_plot.n_features.server Source code
dimension_reduction.highlight_feature.server Source code
dimension_reduction.plot Source code
dimension_reduction.plotbox Source code
dimension_reduction.server Source code
dimension_reduction.show_cluster_idents.server Source code
dimension_reduction.show_selected_clusters.server Source code
dimension_reduction.split_highlight_feature.server Source code
dimension_reduction.ui Source code
dimensionality.elbow Source code
dimensionality.jackstraw Source code
dimensionality.jackstraw_pvalue Source code
dimensionality.plot Source code
dimensionality_tab.server Source code
error_alert Source code
feature_picker.server Source code
feature_picker.ui Source code
feature_ridge_by_idents.server Man page Source code
feature_ridges.plot Source code
feature_ridges_by_ident.server Man page Source code
feature_value_per_cluster.plot Source code
feature_value_per_cluster.server Source code
filter_n_features.server Source code
filter_n_features.ui Source code
filter_n_umi.server Source code
filter_n_umi.ui Source code
filter_proportion_mt.server Source code
filter_proportion_mt.ui Source code
findmarkers_results_tab.server Source code
gene_module_score_in_clusters_tab.server Source code
gene_module_scores_in_a_cluster_tab.server Source code
genes_in_modules.server Source code
genes_in_modules.table Source code
get_formatted_gene_description Source code
go_to_config Source code
go_to_tab Source code
highlight_feature_and_clusters_tab.server Source code
highlight_feature_tab.server Source code
highlight_features.tab Source code
highlight_multiple_features.server Source code
knee.plot Source code
knee_plot.add_common Source code
knee_plot.n_features.server Source code
menuSubItem_icon Source code
missing_data_plot Source code
modify_stop_propagation Source code
opacity.server Source code
opacity.ui Source code
picked_feature_and_description_text_box.server Source code
picked_feature_and_description_text_box.ui Source code
point_size.server Source code
point_size.ui Source code
preferred_choice Man page Source code
preprocessing.tab Source code
process_seurat.server Source code
provenace_picker.server Source code
provenace_picker.ui Source code
provenance.tab Source code
provenance_step_viewer.server Source code
provenance_step_viewer.ui Source code
provenance_tab.server Source code
reformat_project_name Source code
seurat_object_choices.ui Source code
seurat_object_options.ui Source code
seurats_in_workspace.server Source code
seurats_in_workspace.table Source code
seuratvis Man page Source code
shinyAppServer Source code
shinyAppUI Source code
show_filtering_parameters.server Source code
show_filtering_parameters.ui Source code
swap_null Source code
under_construction_icon Source code
visualise_dataset_tab.server Source code
ChristopherBarrington/seuratvis documentation built on Sept. 6, 2021, 11:39 p.m.

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