Files in ChuanHong/PheCAP.tutorial
High-Throughput Phenotyping with EHR using a Common Automated Pipeline
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
PheCAP.Rproj
R/fitting.R
R/nlp.R
R/utils.R
README.Rmd
README.md
archive/PheCAP_1.0.tar.gz
archive/PheCAP_1.1.0.tar.gz
archive/PheCAP_1.2.0.tar.gz
archive/PheCAP_1.2.1.tar.gz
data/ehr_data.rda
docs/404.html
docs/articles/NER-MetaMAP.html
docs/articles/NER-MetaMAP_files/header-attrs-2.7/header-attrs.js
docs/articles/NLP-NILE.html
docs/articles/NLP-NILE_files/header-attrs-2.7/header-attrs.js
docs/articles/example1.html
docs/articles/example1_files/figure-html/unnamed-chunk-9-1.png
docs/articles/example1_files/header-attrs-2.7/header-attrs.js
docs/articles/example2.html
docs/articles/example2_files/figure-html/unnamed-chunk-8-1.png
docs/articles/example2_files/header-attrs-2.7/header-attrs.js
docs/articles/include/CAD_article_mayo.txt
docs/articles/include/CAD_article_medline.txt
docs/articles/include/CAD_article_medscape.txt
docs/articles/include/CAD_article_merck.txt
docs/articles/include/CAD_article_wiki.txt
docs/articles/include/CAD_dict.txt
docs/articles/include/MetaMap_postprocessing.R
docs/articles/include/NLP2014_set1_res.txt
docs/articles/include/img/Screenshot_MetaMap_Website.png
docs/articles/include/img/Screenshot_MetaMap_WikiOutput.png
docs/articles/include/include.html
docs/articles/include/iterate_notes.py
docs/articles/include/xml_Utils.java
docs/articles/index.html
docs/articles/main.html
docs/articles/main_files/header-attrs-2.7/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon.ico
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/PheCAP-package-1.png
docs/reference/PheCAP-package-2.png
docs/reference/PheCAP-package.html
docs/reference/PhecapData.html
docs/reference/PhecapSurrogate.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/ehr_data.html
docs/reference/index.html
docs/reference/phecap_generate_dictionary_file.html
docs/reference/phecap_perform_majority_voting.html
docs/reference/phecap_plot_roc_curves.html
docs/reference/phecap_predict_phenotype.html
docs/reference/phecap_run_feature_extraction.html
docs/reference/phecap_train_phenotyping_model.html
docs/reference/phecap_validate_phenotyping_model.html
include/CAD_article_mayo.txt
include/CAD_article_medline.txt
include/CAD_article_medscape.txt
include/CAD_article_merck.txt
include/CAD_article_wiki.txt
include/CAD_dict.txt
include/MetaMap_postprocessing.R
include/NLP2014_set1_res.txt
include/img/NLP_NILE_output.png
include/img/Screenshot_MetaMap_Website.png
include/img/Screenshot_MetaMap_WikiOutput.png
include/include.Rmd
include/iterate_notes.py
include/xml_Utils.java
man/PheCAP-package.Rd
man/PhecapData.Rd
man/PhecapSurrogate.Rd
man/ehr_data.Rd
man/phecap_generate_dictionary_file.Rd
man/phecap_perform_majority_voting.Rd
man/phecap_plot_roc_curves.Rd
man/phecap_predict_phenotype.Rd
man/phecap_run_feature_extraction.Rd
man/phecap_train_phenotyping_model.Rd
man/phecap_validate_phenotyping_model.Rd
paper/cui_processing.R
paper/main.R
pkgdown/_pkgdown.yml
pkgdown/favicon/favicon.ico
vignettes/NER-MetaMAP.Rmd
vignettes/NLP-NILE.Rmd
vignettes/example1.Rmd
vignettes/example2.Rmd
vignettes/main.Rmd
