Man pages for ClaudiaRHD/chipAnalyseR
R package for rapid ChIP-seq data analysis and visualisation.
| auc_pi | Calculate area under the peak |
| check_bw | checks for bwtool binary |
| get_avg | Order the entries in each matrix according to the average of... |
| get_matrix | Create a matrix with extracted data from a bigWig file within... |
| get_xavg | Order the entries in each matrix according to the rowMeans of... |
| k_means | Order the entries in each matrix according to the order... |
| make_bed | Create a temporary bed file. |
| peak_annos | Create Pie Charts with peak annotations |
| plot_hm | Plot a heatmap of ordered (and clustered) data in mat. |
| plot_MA | Plot the average of the condition group against the... |
| plot_pol2i | Plot calculated polymerase2 pausing index. |
| plot_profile | Plot mean or median values of |
| pol2_index | Calculate polymerase2 pausing index for every gene according... |
| summarize | Calculates mean or median for every region in a bed file. |
| tidy_mat | Removes duplicated rows in the matrices and rows with "NA"... |
