Man pages for Cole-Monnahan-NOAA/adnuts
No-U-Turn MCMC Sampling for 'ADMB' Models
| adfit | Constructor for the "adfit" (A-D fit) class |
| adnuts | adnuts: No-U-turn sampling for AD Model Builder (ADMB) |
| as.data.frame.adfit | Convert object of class adfit to data.frame. Calls... |
| check_identifiable | Check identifiability from model Hessian |
| dot-check_ADMB_version | Check that the model is compiled with the right version of... |
| dot-check_console_printing | Check if the session is interactive or Rstudio which has... |
| dot-check_model_path | Check that the file can be found |
| dot-getADMBHessian | Read in admodel.hes file |
| dot-sample_admb | Hidden wrapper function for sampling from ADMB models |
| dot-update_model | Convert model name depending on system |
| extract_sampler_params | Extract sampler parameters from a fit. |
| extract_samples | Extract posterior samples from a model fit. |
| is.adfit | Check object of class adfit |
| launch_shinyadmb | Launch shinystan for an ADMB fit. |
| launch_shinytmb | Launch shinystan for a TMB fit. |
| pairs_admb | Plot pairwise parameter posteriors and optionally the MLE... |
| plot.adfit | Plot object of class adfit |
| plot_marginals | Plot marginal distributions for a fitted model |
| plot_sampler_params | Plot adaptation metrics for a fitted model. |
| plot_uncertainties | Plot MLE vs MCMC marginal standard deviations for each... |
| print.adfit | Print summary of adfit object |
| sample_admb | Deprecated version of wrapper function. Use sample_nuts or... |
| sample_inits | Function to generate random initial values from a previous... |
| sample_tmb | Bayesian inference of a TMB model using the no-U-turn... |
| sample_tmb_hmc | Draw MCMC samples from a model posterior using a static HMC... |
| sample_tmb_nuts | Draw MCMC samples from a model posterior using the No-U-Turn... |
| sample_tmb_rwm | [Deprecated] Draw MCMC samples from a model posterior using a... |
| summary.adfit | Print summary of object of class adfit |
| wrappers | Bayesian inference of an ADMB model using the no-U-turn... |
