| calcDistanceMatrix | Calculate Distance Matrix |
| calcDistances | Calculate Distance and Weight Matrix |
| calcTstart | Calculate Start Temp for simulated annealing |
| populateSpace | Populate Space with Transmitters and Receivers |
| randomEnergy-trModel-method | Calculate a random energy/cost state for simmulated annealing |
| randWalkLoop | Random Walk |
| simAnneal-trModel-numeric-numeric-method | Simulated Annealing |
| simulateTsCapture | Simulate the Capture of Transmitter Signals by Receiver Beads |
| trModel-class | Class for modeling a transmitter receiver experiment |
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