Files in CompEpigen/DecompPipeline

Preparation pipeline for MeDeCom

R/CpG_subsets.R R/ICA.R R/data_preparation.R R/start_analysis.R R/utilities.R README.md examples/ovarian_cancer/ovarian_dataset.R examples/whole_blood/Factorviz_dataset1.R examples/whole_blood/filtering_data.R examples/whole_blood/generate_rnb_set_only_intmatrix_with_correct_headers.R examples/whole_blood/generate_rnb_set_with_intensity_matrix_with_incorrect_headers.R examples/whole_blood/generate_rnb_set_with_samplesheet_and_idatfiles.R examples/whole_blood/generating_blood_dataset_for_medecom.R examples/whole_blood/genrerate_cor_medecom_and_refernce_datasets.R examples/whole_blood/rnbeadsanalysis.R inst/unitTests/neuronal_data.R inst/unitTests/sequencing_test.R man/prepare.CG.subsets.Rd man/prepare.data.BS.Rd man/prepare.data.Rd man/rnb.set.example.Rd man/run.rnb.ICA.Rd man/start.analysis.Rd man/start.decomp.pipeline.Rd man/start.edec.analysis.Rd man/start.medecom.analysis.Rd man/start.refreeewas.analysis.Rd test/neuronal_data.R vignettes/DecompPipeline.Rmd vignettes/DecompPipeline.md vignettes/DeconvolutionProtocol.Rmd vignettes/DeconvolutionProtocol.md vignettes/DeconvolutionProtocol_RRBS.Rmd vignettes/DeconvolutionProtocol_RRBS.md vignettes/DeconvolutionProtocol_RefFreeEWAS.Rmd vignettes/DeconvolutionProtocol_RefFreeEWAS.md