Man pages for Conte-Ecology/conteStreamTemperature
clean, prepare, and analyze stream temperature data
| addInteractions | addInteractions: Add intercepts, interaction, and polynomial... |
| addStreamMuResid | addStreamMuResid |
| assignCatchments | assignCatchments |
| avgCoefs | avgCoefs: Calculate the mean coefficient estimates from the... |
| calc7DADM | calc7DADM |
| calcConsecExceed | calcConsecExceed |
| calcThresholdDays | calcThresholdDays |
| calcThresholdDaysAnnual | calcThresholdDaysAnnual |
| calcYearsCold | calcYearsCold |
| calcYearsMaxTemp | calcYearsMaxTemp |
| conteStreamTemperature | conteStreamTemperature. |
| convert_neg | convert_neg |
| createEvalRows | createEvalRows: Create rows to loop through for... |
| createFirstRows | createDeployRows: Create rows to loop through for... |
| deriveMetrics | deriveMetrics |
| derive_metrics_par | derive_metrics_par |
| deriveMetricsYear | deriveMetricsYear |
| flag_cold_days | flag_cold_days |
| flag_cold_obs | flag_cold_obs |
| flag_daily_rise | flag_daily_rise |
| flag_extreme_days | flag_extreme_days |
| flag_extreme_obs | flag_extreme_obs |
| flag_hot_days | flag_hot_days |
| flag_hot_obs | flag_hot_obs |
| flag_hourly_rise | flag_hourly_rise |
| flag_incomplete | flag_incomplete |
| flag_interval | flag_interval |
| flag_warm_influence | flag_mad |
| get_daymet_featureids | get_daymet_featureids |
| grapes-not-in-grapes | not in: |
| indexDeployments | indexDeployments: Create an index for each unique temperature... |
| loggAndScaleDaymet | indexUpstreamDaymetVariablesForObservedSites |
| MAD.roller | MAD.roller |
| mae | mae: mean absolute error |
| makeBiasMap | makeBiaseMap |
| modelRegionalTemp | modelRegionalTemp |
| modelRegionalTempAR1 | modelRegionalTempAR1 |
| modelRegionalTempAR1Scaled | modelRegionalTempAR1Scaled |
| modelRegionalTempAR1ScaledSimpleYear | modelRegionalTempAR1ScaledSimpleYear |
| modelRegionalTempAR1SimpleYear | modelRegionalTempAR1SimpleYear |
| modelRegionalTempAR1SiteScaled | modelRegionalTempAR1SiteScaled |
| modelRegionalTempHUC | modelRegionalTempHUC |
| modelRegionalTempWB | modelRegionalTempWB |
| nameCoefs | nameCoefs: Match names of coefficients to the parameter names... |
| nse | nse: Nash-Sutcliffe Efficiency |
| obs_freq | dewater |
| plotPredict | Plot observed and predicted values of stream temperature |
| plotRawTemperatureData | plot raw temps |
| predCubic | predCubic |
| predictTemp | predictTemp: Predict conditional daily temperatures for... |
| prepConditionalCoef | prepConditionalCoef |
| prepData | prepData: Wrapper to prepare data for analysis or predictions |
| prepDataWrapper | prepDataWrapper: Wrapper to prepare data for analysis or... |
| prepDF | prepDF: Prepares dataframe for use or prediction |
| prepPredictDF | prepPredictDF |
| riverLabeller | riverLabeller: Label Rivers |
| rmse | rmse: root mean squared error |
| stdCovs | Standardize variables using the mean and standard deviation... |
| stdFitCovs | Standardize covariates for model fitting |
| validateModel | validateModel: Leave 1 site out model validation |
