Files in Craig44/stockassessmenthelper
Package to help plot stock assessment models and functionality
.Rbuildignore
.Rhistory
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/deploy_bookdown.yml
.gitignore
DESCRIPTION
GitBook/01-NotationAndInference.Rmd
GitBook/02-Distributions.Rmd
GitBook/03-RegressionModelling.Rmd
GitBook/04-Estimators.Rmd
GitBook/05-CatchAndEffortData.Rmd
GitBook/06-SurplusProductionModels.Rmd
GitBook/07-IntegratedStockAssessmentModels.Rmd
GitBook/08-GrowthModels.Rmd
GitBook/12-references.Rmd
GitBook/Figures/dat_weighting.png
GitBook/Figures/settingsTab.png
GitBook/README.md
GitBook/_bookdown.yml
GitBook/_output.yml
GitBook/book.bib
GitBook/index.Rmd
GitBook/packages.bib
GitBook/preamble.tex
GitBook/style.css
NAMESPACE
R/.Rhistory
R/Simplex.R
R/VAlignPlots.R
R/get_df_quantiles.R
R/grooming.R
R/growth_params.R
R/is_invertable.R
R/lognormal_funs.R
R/param_transformations.R
R/plot_comp_resids.R
R/recruit_funs.R
R/selectivity_ogives.R
R/spatial_funs.R
R/surplus_production_funs.R
R/tmb_helper_funs.R
R/utility_math_funs.R
README.md
buildPkg.R
inst/REFERENCES.bib
inst/extdata/2021_profile_R0.casal
inst/extdata/2021_profile_rec_ato95.casal
inst/extdata/MPD_dash_o_file.out
inst/extdata/covar_est.out
inst/extdata/estimate.log
inst/extdata/estimation.csl
inst/extdata/output.csl
inst/extdata/population.csl
inst/extdata/simulated_data.RDS
man/BH.Rd
man/BH_non_equil.Rd
man/LongLatToUTM.Rd
man/Mean.Rd
man/Median.Rd
man/Sd.Rd
man/Sum.Rd
man/VAlignPlots.Rd
man/Var.Rd
man/alr.Rd
man/alrinv.Rd
man/apply_grooming_rule.Rd
man/basic.Rd
man/basic_weight.Rd
man/casalauxillary-package.Rd
man/check_tmb_convergence.Rd
man/constant_sel.Rd
man/cv_by_length.Rd
man/d_exp_sel.Rd
man/d_norm_sel.Rd
man/decdeg2deg.Rd
man/decdeg2deg_v.Rd
man/deg2decdeg.Rd
man/draw_from_radius.Rd
man/eigen_decomp_covariance.Rd
man/exp_sel.Rd
man/fix_pars.Rd
man/general_surplus_production_model_sigma.Rd
man/geometric.mean.Rd
man/get_df_quantiles.Rd
man/get_tmb_fixed_effects.Rd
man/inv_logis_sel.Rd
man/is_invertable.Rd
man/jacobiansimplex.Rd
man/knife_sel.Rd
man/lb_constrain.Rd
man/lb_free.Rd
man/linear_growth_increment_model.Rd
man/lnorm_prior.Rd
man/log_cv.Rd
man/log_sigma.Rd
man/logis_sel.Rd
man/logit.Rd
man/lognormal_CI.Rd
man/long2UTM.Rd
man/lub_constrain.Rd
man/lub_free.Rd
man/normalise.Rd
man/plot_comp_resids.Rd
man/pow.Rd
man/project_SPM.Rd
man/r_lnorm.Rd
man/record_grooming_rule.Rd
man/restoresimplex.Rd
man/rmvnorm_prec.Rd
man/schnute.Rd
man/simplex.Rd
man/simulate_SPM.Rd
man/stretch.Rd
man/surplus_production_millar.Rd
man/surplus_production_model_re_parameterised.Rd
man/surplus_production_model_sigma.Rd
man/theta_logistic.Rd
man/theta_logistic_q.Rd
man/transpose_VB.Rd
man/ub_constrain.Rd
man/ub_free.Rd
man/vonbert.Rd
stockassessmenthelper.Rproj
