| alr | alr |
| alrinv | alrinv |
| apply_grooming_rule | apply_grooming_rule |
| basic | basic |
| basic_weight | basic_weight calculate weight for a given length based on... |
| BH | BH |
| BH_non_equil | BH_non_equil |
| casalauxillary-package | A short title line describing what the package does |
| check_tmb_convergence | check_tmb_convergence |
| constant_sel | constant_sel constant selectivity |
| cv_by_length | cv_by_length |
| decdeg2deg | decdeg2deg |
| decdeg2deg_v | decdeg2deg_v |
| deg2decdeg | deg2decdeg |
| d_exp_sel | d_exp_sel Double Exponential selectivity |
| d_norm_sel | d_norm_sel Double normal selectivity |
| draw_from_radius | draw_from_radius description Stan starts initial values by... |
| eigen_decomp_covariance | eigen_decomp_covariance |
| exp_sel | exp_sel Exponential selectivity |
| fix_pars | fix_pars |
| general_surplus_production_model_sigma | general_surplus_production_model_sigma |
| geometric.mean | Utility functions for generic maths, mostly the same function... |
| get_df_quantiles | get_df_quantiles get quanitles from a data.frame for... |
| get_tmb_fixed_effects | get_tmb_fixed_effects |
| inv_logis_sel | inv_logis_sel Inverse Logisitic selectivity |
| is_invertable | is_invertable test whether a matrix is invertable, used to... |
| jacobiansimplex | jacobiansimplex takes an unconstrained vector of length K -... |
| knife_sel | knife_sel Knife Edge selectivity |
| lb_constrain | lb_constrain convert x(-Inf, Inf) -> y(Lb, Inf] |
| lb_free | lb_constrain convert y(Lb, Inf] -> x(-Inf, Inf) |
| linear_growth_increment_model | linear_growth_increment_model |
| lnorm_prior | lnorm_prior |
| log_cv | log_cv Calculate the CV of the lognormal distribution based... |
| logis_sel | logis_sel Logistic selectivity |
| logit | logit logistic transformation same as qlogis |
| lognormal_CI | lognormal_CI |
| log_sigma | log_sigma |
| long2UTM | long2UTM |
| LongLatToUTM | LongLatToUTM |
| lub_constrain | lub_constrain convert x(-Inf, Inf) -> y(Lb, Ub] |
| lub_free | lub_free convert y(Lb, Ub] -> x(-Inf, Inf) |
| Mean | overloading function to calculate arithmic mean when you have... |
| Median | overloading function to calculate median when you have na's... |
| normalise | scale each element by the arithmic mean |
| plot_comp_resids | plot_comp_resids |
| pow | pow exponential function, helpful when debugging C++... |
| project_SPM | project_SPM |
| record_grooming_rule | record_grooming_rule |
| restoresimplex | restoresimplex takes an unconstrained (each element is... |
| r_lnorm | r_lnorm Generates |
| rmvnorm_prec | rmvnorm_prec |
| schnute | schnute |
| Sd | overloading function to calculate standard deviation when you... |
| simplex | simplex takes a unit vector of length K and converts to... |
| simulate_SPM | simulate_SPM |
| stretch | stretch |
| Sum | overloading function to calculate sum when you have na's in... |
| surplus_production_millar | surplus_production_millar |
| surplus_production_model_re_parameterised | surplus_production_model_re_parameterised |
| surplus_production_model_sigma | surplus_production_model_sigma |
| theta_logistic | theta_logistic |
| theta_logistic_q | theta_logistic_q |
| transpose_VB | transpose_VB |
| ub_constrain | ub_constrain convert x(-Inf, Inf) -> y(-Inf, Ub] |
| ub_free | ub_free convert y(-Inf, Ub] -> x(-Inf, Inf) |
| VAlignPlots | Vertically align a list of plots. |
| Var | overloading function to calculate variance when you have na's... |
| vonbert | vonbert applies the Von Bertalanffy age-length relationship |
