API for CreRecombinase/SeqSupport
Helper functions for the LDshrink and RSS packages
| Global functions | |
|---|---|
| LDshrink_h5_generator | Source code |
| add_chunk_gds | Source code |
| alt_AF | Source code |
| alt_S | Source code |
| calc_LD_gds | Source code |
| calc_N | Source code Source code |
| calc_N_h5 | Source code |
| calc_S | Source code |
| calc_af_h5 | Source code |
| calc_p | Source code Source code |
| calc_p_h5 | Source code |
| calc_uh_se_exp | Source code |
| center_columns | Source code |
| chunk_df_h5 | Source code |
| chunkwise_LDshrink | Source code |
| chunkwise_LDshrink_ldsc | Source code |
| cross_df_h5 | Source code |
| crossprod_quh_h5 | Source code |
| dosage2hdf5 | Source code |
| est_spve_h5 | Source code |
| evd_rnorm_i | Source code |
| ex_subset_function | Source code |
| filter_region_id | Source code |
| gds2hdf5 | Source code |
| gen_map_eqtl_df | Source code |
| gen_outer_df | Source code |
| gen_quh_chunk | Source code |
| gen_quh_chunk_mat | Source code Source code |
| gen_sim_resid | Source code |
| gen_sim_resid_covar | Source code |
| gen_subset_index | Source code |
| gen_subset_index.NULL | Source code |
| gen_subset_index.data.frame | Source code |
| gen_subset_index.default | Source code |
| gen_subset_index.function | Source code |
| gen_subset_index.integer | Source code |
| gen_subset_index.list | Source code |
| gen_ti | Source code |
| gen_ty_h5 | Source code |
| get_colnum_h5 | Source code |
| get_h5f | Source code |
| get_rownum_h5 | Source code |
| group_exists | Source code |
| hello | Man page |
| import_panel_data | Source code |
| is_SNV | Source code |
| is_haplo | Source code |
| is_transpose_h5 | Source code |
| ld_p_h5 | Source code |
| map_eQTL_chunk_h5 | Source code |
| map_eqtl_h5 | Source code |
| match_SNP | Source code |
| match_df_h5 | Source code |
| offset_datasize_generator | Source code |
| orthogonalize_covars | Source code |
| orthogonalize_data | Source code |
| parse_ldsc_h2log | Source code |
| polygenic.model_mat | Source code |
| polygenic.model_svd | Source code |
| prep_h5file | Source code |
| read_SNPinfo | Source code |
| read_SNPinfo_allel | Source code |
| read_SNPinfo_gds | Source code |
| read_SNPinfo_ldsc | Source code |
| read_SNPinfo_ldsc_gwas | Source code |
| read_SNPinfo_ldsc_ld | Source code |
| read_quh_df | Source code |
| read_region_id | Source code |
| read_uh_df | Source code |
| read_vec | Source code |
| seqGetHaploDosage | Source code |
| seqIMPUTE2GDS | Source code |
| sim_U | Source code |
| sim_phenotype_h5 | Source code |
| snpgdsR2SNP | Source code |
| split_i | Source code |
| subset_export_gds | Source code |
| subset_gds | Source code |
| subset_gds_ind | Source code |
| tparamdf_norm | Source code |
| waitr | Source code |
