.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.Rhistory
R/create_probs.R
R/extract_depth.R
R/polyRAD_genotype.R
R/supermassa_genotype.R
R/updog_genotype.R
README.md
inst/python_scripts/.DS_Store
inst/python_scripts/SuperMASSA.py
inst/python_scripts/file_processing.py
inst/python_scripts/inference.py
inst/python_scripts/inference.pyc
inst/python_scripts/numerics.py
inst/python_scripts/numerics.pyc
inst/python_scripts/utilities.py
inst/python_scripts/utilities.pyc
inst/python_scripts/www/SuperMASSA.html
inst/python_scripts/www/launch.cgi
inst/python_scripts/www/simple_data_0,2x1,1.txt
inst/python_scripts/www/simple_data_1,1x1,1.txt
inst/python_scripts/www/sugarcane_data.tgz
inst/python_scripts/www/sugarcane_data/SugSNP114_parents
inst/python_scripts/www/sugarcane_data/SugSNP114_progeny
inst/python_scripts/www/sugarcane_data/SugSNP117_parents
inst/python_scripts/www/sugarcane_data/SugSNP117_progeny
inst/python_scripts/www/sugarcane_data/SugSNP122_parents
inst/python_scripts/www/sugarcane_data/SugSNP122_progeny
inst/python_scripts/www/sugarcane_data/SugSNP136_parents
inst/python_scripts/www/sugarcane_data/SugSNP136_progeny
inst/python_scripts/www/sugarcane_data/SugSNP13_parents
inst/python_scripts/www/sugarcane_data/SugSNP13_progeny
inst/python_scripts/www/sugarcane_data/SugSNP151_parents
inst/python_scripts/www/sugarcane_data/SugSNP151_progeny
inst/python_scripts/www/sugarcane_data/SugSNP162_parents
inst/python_scripts/www/sugarcane_data/SugSNP162_progeny
inst/python_scripts/www/sugarcane_data/SugSNP186_parents
inst/python_scripts/www/sugarcane_data/SugSNP186_progeny
inst/python_scripts/www/sugarcane_data/SugSNP201_parents
inst/python_scripts/www/sugarcane_data/SugSNP201_progeny
inst/python_scripts/www/sugarcane_data/SugSNP204_parents
inst/python_scripts/www/sugarcane_data/SugSNP204_progeny
inst/python_scripts/www/sugarcane_data/SugSNP225_parents
inst/python_scripts/www/sugarcane_data/SugSNP225_progeny
inst/python_scripts/www/sugarcane_data/SugSNP235_parents
inst/python_scripts/www/sugarcane_data/SugSNP235_progeny
inst/python_scripts/www/sugarcane_data/SugSNP237_parents
inst/python_scripts/www/sugarcane_data/SugSNP237_progeny
inst/python_scripts/www/sugarcane_data/SugSNP241_parents
inst/python_scripts/www/sugarcane_data/SugSNP241_progeny
inst/python_scripts/www/sugarcane_data/SugSNP37_parents
inst/python_scripts/www/sugarcane_data/SugSNP37_progeny
inst/python_scripts/www/sugarcane_data/SugSNP41_parents
inst/python_scripts/www/sugarcane_data/SugSNP41_progeny
inst/python_scripts/www/sugarcane_data/SugSNP45_parents
inst/python_scripts/www/sugarcane_data/SugSNP45_progeny
inst/python_scripts/www/sugarcane_data/SugSNP48_parents
inst/python_scripts/www/sugarcane_data/SugSNP48_progeny
inst/python_scripts/www/sugarcane_data/SugSNP4_parents
inst/python_scripts/www/sugarcane_data/SugSNP4_progeny
inst/python_scripts/www/sugarcane_data/SugSNP50_parents
inst/python_scripts/www/sugarcane_data/SugSNP50_progeny
inst/python_scripts/www/sugarcane_data/SugSNP5_parents
inst/python_scripts/www/sugarcane_data/SugSNP5_progeny
inst/python_scripts/www/sugarcane_data/SugSNP60_parents
inst/python_scripts/www/sugarcane_data/SugSNP60_progeny
inst/python_scripts/www/sugarcane_data/SugSNP65_parents
inst/python_scripts/www/sugarcane_data/SugSNP65_progeny
inst/python_scripts/www/sugarcane_data/SugSNP77_parents
inst/python_scripts/www/sugarcane_data/SugSNP77_progeny
inst/python_scripts/www/sugarcane_data/SugSNP79_parents
inst/python_scripts/www/sugarcane_data/SugSNP79_progeny
inst/python_scripts/www/sugarcane_data/SugSNP82_parents
inst/python_scripts/www/sugarcane_data/SugSNP82_progeny
inst/python_scripts/www/sugarcane_data/SugSNP88_parents
inst/python_scripts/www/sugarcane_data/SugSNP88_progeny
inst/python_scripts/www/tag_cloud.gif
inst/python_scripts/www/tag_cloud.png
inst/python_scripts/www/us.jpg
man/create_probs.Rd
man/depth_prepare.Rd
man/extract_depth.Rd
man/hello.Rd
man/plot_error_dist.Rd
man/polyRAD_genotype.Rd
man/supermassa_genotype.Rd
man/supermassa_parallel.Rd
man/updog_genotype.Rd