Files in DARTH-git/darthpack
The Decision Analysis in R for Technologies in Health (DARTH) coding framework
.DS_Store
.Rbuildignore
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/.DS_Store
R/01_model_inputs_functions.R
R/02_decision_model_functions.R
R/03_calibration_functions.R
R/04_validation_functions.R
R/05a_probabilistic_analysis_functions.R
R/05b_deterministic_analysis_functions.R
R/darthpack.R
R/data_all_cause_mortality.R
R/data_calib_post_dist.R
R/data_calib_post_map.R
R/data_calibration_targets.R
R/data_cea_psa.R
R/data_init_params.R
R/data_posterior_summ.R
R/data_psa_object.R
R/open_guide.R
README.Rmd
README.md
Shiny_framework.R
_pkgdown.yaml
analysis/01_model_inputs.R
analysis/02_decision_model.R
analysis/03_calibration.R
analysis/04_validation.R
analysis/05a_probabilistic_analysis.R
analysis/05b_deterministic_analysis.R
analysis/05c_value_of_information.R
analysis/_master.R
darthpack.Rproj
data-raw/.DS_Store
data-raw/01_all_cause_mortality.R
data-raw/01_all_cause_mortality.csv
data-raw/01_basecase_params.csv
data-raw/01_init_params.R
data-raw/01_init_params.csv
data-raw/03_imis_output.R
data-raw/05a_psa_dataset.R
data/.DS_Store
data/03_calibration_targets.RData
data/03_summary_posterior.RData
data/05a_probabilistic_cea_results.RData
data/all_cause_mortality.rda
data/df_params_init.rda
data/l_psa.rda
data/m_calib_post.rda
data/v_calib_post_map.rda
docs/.DS_Store
docs/CODE_OF_CONDUCT.html
docs/LICENSE-text.html
docs/articles/.DS_Store
docs/articles/aa-introduction.html
docs/articles/bb-inputs.html
docs/articles/cc-model.html
docs/articles/cc-model_files/figure-html/Sick-Sicker-Trace-1.png
docs/articles/darthpack.html
docs/articles/dd-calibration.html
docs/articles/dd-calibration_files/kePrint-0.0.1/kePrint.js
docs/articles/ee-validation.html
docs/articles/ff-analysis.html
docs/articles/index.html
docs/articles/zz-testing.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/figs/.DS_Store
docs/figs/02_model_diagram.png
docs/figs/02_trace_plot.png
docs/figs/03_posterior_distribution_joint.png
docs/figs/03_posterior_distribution_marginal.png
docs/figs/04_posterior_vs_targets_prevalence.png
docs/figs/04_posterior_vs_targets_proportion_sicker.png
docs/figs/04_posterior_vs_targets_survival.png
docs/figs/05a_cea_frontier_psa.png
docs/figs/05a_cea_plane_scatter.png
docs/figs/05a_ceac_ceaf.png
docs/figs/05a_elc.png
docs/figs/05a_optimal_owsa_lrm_nmb.png
docs/figs/05a_owsa_lrm_nmb.png
docs/figs/05a_tornado_lrm_Treatment_nmb.png
docs/figs/05a_twsa_lrm_uS1_uTrt_nmb.png
docs/figs/05b_cea_frontier.png
docs/figs/05b_cea_frontier_psa.png
docs/figs/05b_cea_plane_scatter.png
docs/figs/05b_ceac_ceaf.png
docs/figs/05b_elc.png
docs/figs/05b_optimal_owsa_lrm_nmb.png
docs/figs/05b_optimal_owsa_nmb.png
docs/figs/05b_owsa_lrm_nmb.png
docs/figs/05b_owsa_nmb.png
docs/figs/05b_tornado_Treatment_nmb.png
docs/figs/05b_tornado_lrm_Treatment_nmb.png
docs/figs/05b_twsa_lrm_uS1_uTrt_nmb.png
docs/figs/05b_twsa_uS1_uTrt_nmb.png
docs/figs/05c_evpi.png
docs/figs/darth-logo-small.png
docs/figs/under_const.jpeg
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/news/news-0.1.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/SickSicker_targets.html
docs/reference/all_cause_mortality.html
docs/reference/calculate_ce_out.html
docs/reference/calibration_out.html
docs/reference/check_sum_of_transition_array.html
docs/reference/check_transition_array.html
docs/reference/check_transition_probability.html
docs/reference/darthpack.html
docs/reference/data_summary.html
docs/reference/decision_model.html
docs/reference/df_cea_psa.html
docs/reference/df_params_init.html
docs/reference/df_posterior_summ.html
docs/reference/figures/logo.png
docs/reference/generate_psa_params.html
docs/reference/index.html
docs/reference/l_psa.html
docs/reference/likelihood.html
docs/reference/load_all_params.html
docs/reference/load_mort_data.html
docs/reference/log_lik.html
docs/reference/log_post.html
docs/reference/log_prior.html
docs/reference/m_calib_post.html
docs/reference/open_guide.html
docs/reference/owsa_det.html
docs/reference/posterior.html
docs/reference/prior.html
docs/reference/sample.prior.html
docs/reference/twsa_det.html
docs/reference/update_param_list.html
docs/reference/v_calib_post_map.html
docs/sitemap.xml
docs/vignettes/test_summary.png
figs/02_model_diagram.png
figs/02_trace_plot.png
figs/03_posterior_distribution_joint.png
figs/03_posterior_distribution_marginal.png
figs/04_posterior_vs_targets_prevalence.png
figs/04_posterior_vs_targets_proportion_sicker.png
figs/04_posterior_vs_targets_survival.png
figs/05a_cea_frontier_psa.png
figs/05a_cea_plane_scatter.png
figs/05a_ceac_ceaf.png
figs/05a_elc.png
figs/05a_optimal_owsa_lrm_nmb.png
figs/05a_owsa_lrm_nmb.png
figs/05a_tornado_lrm_Treatment_nmb.png
figs/05a_twsa_lrm_uS1_uTrt_nmb.png
figs/05b_cea_frontier.png
figs/05b_optimal_owsa_nmb.png
figs/05b_owsa_nmb.png
figs/05b_tornado_Treatment_nmb.png
figs/05b_twsa_uS1_uTrt_nmb.png
figs/05c_evpi.png
inst/.DS_Store
inst/WORDLIST
inst/figs/.DS_Store
inst/figs/STD-Sick-Sicker-big-font-trans.png
inst/figs/darthpack_hexsticker.png
man/SickSicker_targets.Rd
man/all_cause_mortality.Rd
man/calculate_ce_out.Rd
man/calibration_out.Rd
man/check_sum_of_transition_array.Rd
man/check_transition_probability.Rd
man/darthpack.Rd
man/data_summary.Rd
man/decision_model.Rd
man/df_cea_psa.Rd
man/df_params_init.Rd
man/df_posterior_summ.Rd
man/figures/logo.png
man/generate_psa_params.Rd
man/l_psa.Rd
man/likelihood.Rd
man/load_all_params.Rd
man/load_mort_data.Rd
man/log_lik.Rd
man/log_post.Rd
man/log_prior.Rd
man/m_calib_post.Rd
man/open_guide.Rd
man/owsa_det.Rd
man/posterior.Rd
man/prior.Rd
man/sample.prior.Rd
man/twsa_det.Rd
man/update_param_list.Rd
man/v_calib_post_map.Rd
output/03_imis_output.RData
output/05a_psa_dataset.RData
packages.bib
report/.DS_Store
report/01-inputs.Rmd
report/02-decision_model.Rmd
report/03-calibration.Rmd
report/04-validation.Rmd
report/05-analysis.Rmd
report/06-references.Rmd
report/README.md
report/_book/analysis.html
report/_book/calibration.html
report/_book/index.html
report/_book/inputs.html
report/_book/libs/gitbook-2.6.7/css/fontawesome/fontawesome-webfont.ttf
report/_book/libs/gitbook-2.6.7/css/plugin-bookdown.css
report/_book/libs/gitbook-2.6.7/css/plugin-fontsettings.css
report/_book/libs/gitbook-2.6.7/css/plugin-highlight.css
report/_book/libs/gitbook-2.6.7/css/plugin-search.css
report/_book/libs/gitbook-2.6.7/css/plugin-table.css
report/_book/libs/gitbook-2.6.7/css/style.css
report/_book/libs/gitbook-2.6.7/js/app.min.js
report/_book/libs/gitbook-2.6.7/js/jquery.highlight.js
report/_book/libs/gitbook-2.6.7/js/lunr.js
report/_book/libs/gitbook-2.6.7/js/plugin-bookdown.js
report/_book/libs/gitbook-2.6.7/js/plugin-fontsettings.js
report/_book/libs/gitbook-2.6.7/js/plugin-search.js
report/_book/libs/gitbook-2.6.7/js/plugin-sharing.js
report/_book/libs/jquery-2.2.3/jquery.min.js
report/_book/libs/kePrint-0.0.1/kePrint.js
report/_book/references.html
report/_book/report.epub
report/_book/report.pdf
report/_book/report.tex
report/_book/report_files/figure-html/Sick-Sicker-Trace-1.png
report/_book/search_index.json
report/_book/simulation.html
report/_book/style.css
report/_book/validation.html
report/_bookdown.yml
report/_bookdown_files/report_files/figure-html/Sick-Sicker-Trace-1.png
report/_bookdown_files/report_files/figure-latex/Sick-Sicker-Trace-1.pdf
report/_output.yml
report/book.bib
report/figs/02_model_diagram.png
report/figs/03_posterior_distribution_joint.png
report/figs/03_posterior_distribution_marginal.png
report/figs/04_posterior_vs_targets_prevalence.png
report/figs/04_posterior_vs_targets_proportion_sicker.png
report/figs/04_posterior_vs_targets_survival.png
report/figs/05a_cea_frontier.png
report/figs/05a_cea_frontier_psa.png
report/figs/05a_cea_plane_scatter.png
report/figs/05a_ceac_ceaf.png
report/figs/05a_elc.png
report/figs/05a_optimal_owsa_lrm_nmb.png
report/figs/05a_optimal_owsa_nmb.png
report/figs/05a_owsa_lrm_nmb.png
report/figs/05a_owsa_nmb.png
report/figs/05a_tornado_Treatment_nmb.png
report/figs/05a_tornado_lrm_Treatment_nmb.png
report/figs/05a_twsa_lrm_uS1_uTrt_nmb.png
report/figs/05a_twsa_uS1_uTrt_nmb.png
report/figs/05b_cea_frontier.png
report/figs/05b_cea_frontier_psa.png
report/figs/05b_cea_plane_scatter.png
report/figs/05b_ceac_ceaf.png
report/figs/05b_elc.png
report/figs/05b_optimal_owsa_lrm_nmb.png
report/figs/05b_optimal_owsa_nmb.png
report/figs/05b_owsa_lrm_nmb.png
report/figs/05b_owsa_nmb.png
report/figs/05b_tornado_Treatment_nmb.png
report/figs/05b_tornado_lrm_Treatment_nmb.png
report/figs/05b_twsa_lrm_uS1_uTrt_nmb.png
report/figs/05b_twsa_uS1_uTrt_nmb.png
report/figs/05c_evpi.png
report/index.Rmd
report/packages.bib
report/preamble.tex
report/report.Rproj
report/report.log
report/style.css
tables/03_summary_posterior.RData
tables/03_summary_posterior.csv
tables/05a_probabilistic_cea_results.RData
tables/05a_probabilistic_cea_results.csv
tables/05b_deterministic_cea_results.RData
tables/05b_deterministic_cea_results.csv
tests/testthat.R
tests/testthat/test_02_simulation_model_functions.R
tests/testthat/test_05a_deterministic_analysis_function.R
vignettes/.DS_Store
vignettes/.gitignore
vignettes/aa-introduction.Rmd
vignettes/bb-inputs.Rmd
vignettes/book.bib
vignettes/cc-model.Rmd
vignettes/darthpack.Rmd
vignettes/dd-calibration.Rmd
vignettes/ee-validation.Rmd
vignettes/ff-analysis.Rmd
vignettes/packages.bib
vignettes/test_summary.png
vignettes/zz-testing.Rmd
