Man pages for DARTH-git/darthtools
darthtools is an R package that contains tools developed by the Decision Analysis in R for Technologies in Health (DARTH) workgroup to construct model-based cost-effectiveness analysis in R.
| add_common_aes | Adds aesthetics to all plots to reduce code duplication |
| all_partsurv | Fit partitioned survival model on all combinations of chosen... |
| boot.haz | Bootstrap hazards |
| boot_haz_np | Non-parametric hazard bootstrap 'boot_haz_np' computes... |
| boot_hr | Bootstrap hazards ratios of two survival models 'boot_hr'... |
| calc_prevalence | Calculate prevalence |
| calc_prop_sicker | Calculate state-in-state proportions |
| calc_sick | Calculate state proportions |
| calc_surv | Calculate survival probabilities |
| check_list_elements | Check if the each item in the list contains information. |
| check_PFS_OS | Print a warning message if PFS > OS |
| check_sum_of_transition_array | Check if the sum of transition probabilities equal to one. |
| check_transition_probability | Check if transition array is valid |
| create_at_risk_table | Function to create at-risk table. |
| cumhaz_to_haz | Converts cumulative hazards to hazard rates |
| expected_surv | Calculate expected survival. |
| find_interval_limits | Determine which rows the upper and lower values of each... |
| fit.fun | Fit multiple survival models on survival data |
| fit.fun.cure | Fit multiple mixture cure models on survival data |
| fit.models.cure | Fit parametric mixture cure survival models for health... |
| fit.mstate | Fit multi-state model. |
| format_table_cea | Format CEA table |
| gen_data | Generate data for partitioned survival models (PFS and OS... |
| gen_wcc | Within-cycle correction (WCC) |
| get_DARTH_cols | Get DARTH colors |
| get_os | Get operating system |
| hazard.fn | Calculates hazards |
| labfun | used to automatically label continuous scales |
| model.dist | Calculate survival probabilities given a survival... |
| model.rmvnorm | Randomly draw parameter values of survival models from... |
| normboot.haz | Bootstrap hazards |
| number_ticks | Number of ticks for 'ggplot2' plots |
| odds_to_prob | Convert a odds to a probability |
| partsurv | Fit partitioned survival model to survival data |
| plot_ceac | Plot of Cost-Effectiveness Acceptability Curves (CEAC) |
| plot_evpi | Plot of Expected Value of Perfect Information (EVPI) |
| plot_exp_loss | Plot of Expected Loss Curves (ELC) |
| plot_icers | Plot of ICERs |
| plot_prevalence | Plot prevalence curve |
| plot_proportion_sicker | Plot state-in-state proportion curve |
| plot_psa | Plot the psa object |
| plot_surv | Plot survival curve |
| plot_tc | Plot density of total cost |
| plot_te | Plot density of total QALYs |
| plot_trace | Plot cohort trace |
| plot_trace_microsim | Plot cohort trace of a microsimulation model |
| plot_trace_microsim_shiny | Plot cohort trace of a microsimulation model for the Shiny... |
| plot_trace_PSM | Plot Markov trace from a partitioned survival model. |
| plot_trace_strategy | Plot cohort trace per strategy |
| prob_to_odds | Convert a probability to an odds |
| prob_to_prob | Convert a probability to a probability with a different... |
| prob_to_rate | Convert a probability to a rate |
| rate_to_prob | Convert a rate to a probability |
| runMLE.cure | run MLE on cure models |
| samplev | Vectorized categorical distribution |
| surv_prob | Calculate survival probabilities. |
| surv_to_haz | Convert survival probabilities to hazard rates. |
| trace.DES | Compute Markov trace out of a multi-state model using DES. |
| trans_prob | Calculate transition probabilities. |
| trans_to_surv | Convert transition probabilities back to survival... |
| update_param_list | Update parameters |
